Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

28067316 .. 28069848

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G020590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGGGCCGATCTGCCATGAATAAGGCGTCCAACGTAGCGGTCAACGCTTTGCACAAGCAAACTTCCCTGAGGGGAGTGGCACCATGCGCGGACAAACGTTGCGGAATTTTGACATCCGTAAGTAGACCCCCTACCCATGAGAGTGCTAGTGGAGCAGAACGAATTGAAATCTCAAATGAAAATGAGATAGAGTCAACGCTTCAAGGTGATGCAGATAGTAAGAAGAGGAGACATATTTCAGCTATTTGGAATCATTTTACAAAACAAGTAGATGGAAAGTGTATTTGCAAGTATTGTAGTAAAGTCATAGCTGGTGGGGGCAGAATAGGGACACATGGTTTACATGGACATCATAAATCATGCCCCGAGTTGAAAAATAAAAGAAAAAAGGGTCATGGGTCTGCATCTGTCAAGGTTGGAGGGTATGATTTCGATGAATTTGAGTCAAGAAAATTGCTTGCACACATGATTATAAAACATGAGTATCCTTTGCGCATGGTTGAGCATGATGGATTCAGGGAGGTTTGTTACTCTTTACAACCATTGTTTAGAGTTATTTCTCTATTCACGATCAAGAGAGATATCATAAAGATCTATGAGTACGAGAAAGAGAGGACAATGCAATTGTTGAGTACGAATAGTAGTAGAATTGCAATCACAACAGACTTCAAACAACCAAAAGAGGGGTTTCATGACCGTGACCGCACATTTCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

240

Amino Acids

27.19

Weight (kDa)

9.49

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
Acc16I	TGCGCA	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	1 cut(s)	92
AciI	CCGC	4 cut(s)	41, 92, 105, 706
AclI	AACGTT	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	108, 440
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	605, 637
AfiI	CCNNNNNNNGG	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	170, 206, 376, 673
AluBI	AGCT	2 cut(s)	245, 314
AluI	AGCT	2 cut(s)	245, 314
Alw26I	GTCTC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	108, 440
AspLEI	GCGC	2 cut(s)	92, 498
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	470, 503
BanI	GGYRCC	1 cut(s)	82
BccI	CCATC	2 cut(s)	269, 506
BciVI	GTATCC	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	2 cut(s)	202, 416
BsaHI	GRCGYC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse21I	CCTNAGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	11, 573, 594
BspACI	CCGC	4 cut(s)	41, 92, 105, 706
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	82
BssMI	GATC	3 cut(s)	11, 573, 594
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	92, 498
BstKTI	GATC	3 cut(s)	14, 576, 597
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	11, 573, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 89, 155
BstUI	CGCG	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
Bsu36I	CCTNAGG	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	462
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	2 cut(s)	92, 498
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	604, 636
CviJI	RGCY	3 cut(s)	9, 245, 314
CviKI_1	RGCY	3 cut(s)	9, 245, 314
CviQI	GTAC	2 cut(s)	604, 636
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	13, 575, 596
DpnII	GATC	3 cut(s)	11, 573, 594
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	586
Eco81I	CCTNAGG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	586
FaqI	GGGAC	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	127
FokI	GGATG	1 cut(s)	103
FspBI	CTAG	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	497
GlaI	GCGC	2 cut(s)	91, 497
HaeIII	GGCC	1 cut(s)	9
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	92, 498
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	2 cut(s)	90, 496
HinP1I	GCGC	2 cut(s)	90, 496
HincII	GTYRAC	2 cut(s)	46, 198
HindII	GTYRAC	2 cut(s)	46, 198
HinfI	GANTC	4 cut(s)	194, 253, 446, 516
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	4 cut(s)	46, 128, 198, 344
Hpy188III	TCNNGA	4 cut(s)	450, 571, 577, 695
Hpy8I	GTNNAC	4 cut(s)	46, 128, 198, 344
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	2 cut(s)	36, 100
HpyCH4V	TGCA	7 cut(s)	55, 215, 291, 407, 464, 625, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 89, 155
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	36, 100
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	2 cut(s)	90, 496
Kzo9I	GATC	3 cut(s)	11, 573, 594
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	3 cut(s)	83, 300, 505
LweI	GCATC	2 cut(s)	202, 416
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	36, 100
MaeIII	GTNAC	2 cut(s)	530, 701
MalI	GATC	3 cut(s)	13, 575, 596
MboI	GATC	3 cut(s)	11, 573, 594
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	626
MflI	RGATCY	1 cut(s)	594
MluCI	AATT	6 cut(s)	108, 165, 440, 455, 626, 651
MlyI	GAGTC	2 cut(s)	203, 455
MmeI	TCCRAC	2 cut(s)	57, 400
MnlI	CCTC	6 cut(s)	66, 222, 416, 517, 609, 679
MslI	CAYNNNNRTG	2 cut(s)	144, 699
MunI	CAATTG	1 cut(s)	626
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	47, 89, 155
NdeII	GATC	3 cut(s)	11, 573, 594
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	701
NsbI	TGCGCA	1 cut(s)	497
PagI	TCATGA	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	253, 516
PleI	GAGTC	2 cut(s)	202, 454
PpsI	GAGTC	2 cut(s)	202, 454
PsiI	TTATAA	1 cut(s)	476
Psp1406I	AACGTT	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	594
RsaI	GTAC	2 cut(s)	605, 637
RsaNI	GTAC	2 cut(s)	604, 636
RseI	CAYNNNNRTG	2 cut(s)	144, 699
Sau3AI	GATC	3 cut(s)	11, 573, 594
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	203, 455
SetI	ASST	7 cut(s)	39, 103, 211, 247, 316, 420, 528
SfaNI	GCATC	2 cut(s)	202, 416
SmiMI	CAYNNNNRTG	2 cut(s)	144, 699
Sse9I	AATT	6 cut(s)	108, 165, 440, 455, 626, 651
SsiI	CCGC	4 cut(s)	41, 92, 105, 706
SspMI	CTAG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	2 cut(s)	39, 103
TaqI	TCGA	1 cut(s)	435
TasI	AATT	6 cut(s)	108, 165, 440, 455, 626, 651
TfiI	GAWTC	2 cut(s)	253, 516
TseFI	GTSAC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	5 cut(s)	35, 195, 453, 683, 704
TspGWI	ACGGA	1 cut(s)	109
XapI	RAATTY	2 cut(s)	108, 440
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.