Rroxscaffold_7G00176640

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001193
Physical Location & Seq
Forward (+)
16259966 .. 16271332
11367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176640.1

Sequence Viewer

Length: 573 bp
ATGGAAGATATGTCATATAGCTGTGCTAATAATGAAATAATGGATGAGGATGTGGAACAAAGGGTTCCAAGCAAAAGAAAGAGGACAGCTGCAGTATGGGATAATTTTGAAGTAAAAGTGATCAAAGGGGAAGAGAAAGCAGTTTGTAAGCATTGCGGCAAGATCCTAAGTGCAAAGTCTTCAAATGGAACTAATTCCTTGAATTTACATGTTAAATCATGTAAAGGACTAATCCCCCAATCAACAAGGAGCGAGGGGACAATCATATTTGGTCATTTTTATGAGAGTAATGCAAAGATTGAGCTTGCTAATATGATCATCTTGCATGAGTACCAATTATCGATGGTTGAGCATCTCGGGTTCAGGAGGTATTCTAATGCATTACAACCTTCCTTTAGGGTTCCATGTAGAAACACAATCAAGAAGGAGATTATGAAGATCTATGAATTCGAGAAAGAAAAGACAATGAAGCTTGTACATATGAATAGAAGTAGAATTGCAATCACTACGGACATGTGGACTGCAAGTAATCAAAAAGAAAGGATTTATGGCCATAACATCGCATTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

190

Amino Acids

22.0

Weight (kDa)

9.15

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 40 - 73 4.6e-06 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 2 cut(s) 202, 446
AfaI GTAC 2 cut(s) 332, 477
AflIII ACRYGT 2 cut(s) 208, 513
AgsI TTSAA 3 cut(s) 110, 183, 202
AluBI AGCT 4 cut(s) 21, 89, 304, 472
AluI AGCT 4 cut(s) 21, 89, 304, 472
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 550
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 202, 446
Asp700I GAANNNNTTC 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 356
BalI TGGCCA 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 337
BclI TGATCA 2 cut(s) 120, 315
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 438
BisI GCNGC 2 cut(s) 90, 157
BlsI GCNGC 2 cut(s) 91, 158
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 66, 402
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 341
BseGI GGATG 2 cut(s) 49, 55
BseMI GCAATG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 552
BshVI ATCGAT 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 356
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 4 cut(s) 120, 162, 315, 438
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 552
BspDI ATCGAT 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 66, 402
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 475
BssMI GATC 4 cut(s) 120, 162, 315, 438
Bst6I CTCTTC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 49, 55
BstKTI GATC 4 cut(s) 123, 165, 318, 441
BstMBI GATC 4 cut(s) 120, 162, 315, 438
BstNSI RCATGY 2 cut(s) 212, 517
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 162, 438
BstYI RGATCY 2 cut(s) 162, 438
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 1 cut(s) 552
BsuTUI ATCGAT 1 cut(s) 341
BtgZI GCGATG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 49, 55
Cac8I GCNNGC 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 341
Csp6I GTAC 2 cut(s) 331, 476
CviAII CATG 5 cut(s) 209, 219, 326, 405, 514
CviJI RGCY 5 cut(s) 21, 89, 304, 472, 552
CviKI_1 RGCY 5 cut(s) 21, 89, 304, 472, 552
CviQI GTAC 2 cut(s) 331, 476
DdeI CTNAG 1 cut(s) 167
DpnI GATC 4 cut(s) 122, 164, 317, 440
DpnII GATC 4 cut(s) 120, 162, 315, 438
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 5 cut(s) 212, 222, 329, 408, 517
FaqI GGGAC 1 cut(s) 271
FatI CATG 5 cut(s) 208, 218, 325, 404, 513
FauNDI CATATG 1 cut(s) 480
FbaI TGATCA 2 cut(s) 120, 315
Fnu4HI GCNGC 2 cut(s) 90, 157
FokI GGATG 2 cut(s) 56, 62
Fsp4HI GCNGC 2 cut(s) 90, 157
GluI GCNGC 2 cut(s) 90, 157
HaeIII GGCC 1 cut(s) 552
Hin1II CATG 5 cut(s) 212, 222, 329, 408, 517
HindIII AAGCTT 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 519
Hpy188III TCNNGA 3 cut(s) 364, 421, 451
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 2 cut(s) 399, 418
HpyCH4V TGCA 7 cut(s) 92, 173, 293, 325, 380, 500, 524
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 5 cut(s) 212, 222, 329, 408, 517
Ksp22I TGATCA 2 cut(s) 120, 315
Kzo9I GATC 4 cut(s) 120, 162, 315, 438
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 1 cut(s) 349
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 361
MalI GATC 4 cut(s) 122, 164, 317, 440
MboI GATC 4 cut(s) 120, 162, 315, 438
MboII GAAGA 4 cut(s) 17, 143, 171, 448
MflI RGATCY 2 cut(s) 162, 438
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 6 cut(s) 103, 193, 202, 335, 446, 495
MluNI TGGCCA 1 cut(s) 552
MnlI CCTC 4 cut(s) 40, 75, 247, 360
Mox20I TGGCCA 1 cut(s) 552
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 193
MscI TGGCCA 1 cut(s) 552
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 89
NdeI CATATG 1 cut(s) 480
NdeII GATC 4 cut(s) 120, 162, 315, 438
NlaIII CATG 5 cut(s) 212, 222, 329, 408, 517
NlaIV GGNNCC 2 cut(s) 66, 402
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 2 cut(s) 212, 517
PciI ACATGT 2 cut(s) 208, 513
PdmI GAANNNNTTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 91, 158
PscI ACATGT 2 cut(s) 208, 513
PspN4I GGNNCC 2 cut(s) 66, 402
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 2 cut(s) 162, 438
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 332, 477
RsaNI GTAC 2 cut(s) 331, 476
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 90, 157
Sau3AI GATC 4 cut(s) 120, 162, 315, 438
SetI ASST 6 cut(s) 23, 91, 306, 371, 391, 474
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 6 cut(s) 103, 193, 202, 335, 446, 495
SsiI CCGC 1 cut(s) 156
TaqI TCGA 2 cut(s) 341, 450
TasI AATT 6 cut(s) 103, 193, 202, 335, 446, 495
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 5 cut(s) 48, 449, 459, 482, 497
TspGWI ACGGA 1 cut(s) 524
XapI RAATTY 2 cut(s) 202, 446
XceI RCATGY 2 cut(s) 212, 517
XmnI GAANNNNTTC 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.