Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

20631191 .. 20631804

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G009220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAGATATGTCGTATAGCTGTGCTAATAATGAAATAATGGATGAGGATGTGGAACAAAGTGTTGGACGCAAAAGAAAGAGGAAAGCAGCGGTATGGGATAATTTTGAAGTAAAATCTTCAAATGGAACTAATTCCTTGAATTTACATGTTAAATCATGTAAAGGACTAAAGCCCCAATCAAGAAGGAGCGAGGGGACAGTCATATTTGGTCATTTTGATGAGAGTAATGCAAAGACTGAGCTTGCCAATATGATCATCTTGCATAAGTACCAATTATCGATGGTTGAGCATCTCGGGTTTAGGAGGTATTCTAATGCATTACAACCTTCCTTTAGGGTTCCATGTAGAAACACAATCAAGAAGGAGATTATGAAGATCTATGAATTCGAGAAAGAAAAGACAGTGAAGGTTATACATATGAATAGAAGTAGAATTGCAATCACTACAAACATGTGGACTGCAAGTAATCAAAATAAAGGATTTATGGCCATAACATCGCATTTTGTTGATGATTCTTGGAACTTGCAGAGTCGACTTTTGAGGTATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

184

Amino Acids

21.43

Weight (kDa)

9.56

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	142, 386
AfaI	GTAC	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	148, 453
AgsI	TTSAA	3 cut(s)	110, 123, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	2 cut(s)	21, 244
AluI	AGCT	2 cut(s)	21, 244
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	142, 386
Asp700I	GAANNNNTTC	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	255
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	342
BmsI	GCATC	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	281
BseGI	GGATG	2 cut(s)	49, 55
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	255, 378
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	342
BssMI	GATC	2 cut(s)	255, 378
Bst4CI	ACNGT	2 cut(s)	202, 406
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	49, 55
BstKTI	GATC	2 cut(s)	258, 381
BstMBI	GATC	2 cut(s)	255, 378
BstNSI	RCATGY	2 cut(s)	152, 457
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	491
BsuTUI	ATCGAT	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	49, 55
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	4 cut(s)	149, 159, 345, 454
CviJI	RGCY	4 cut(s)	21, 175, 244, 491
CviKI_1	RGCY	4 cut(s)	21, 175, 244, 491
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	257, 380
DpnII	GATC	2 cut(s)	255, 378
EaeI	YGGCCR	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	4 cut(s)	152, 162, 348, 457
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	4 cut(s)	148, 158, 344, 453
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	56, 62
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	491
HgaI	GACGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	152, 162, 348, 457
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HinfI	GANTC	2 cut(s)	515, 532
Hpy166II	GTNNAC	2 cut(s)	459, 536
Hpy188III	TCNNGA	3 cut(s)	183, 361, 391
Hpy8I	GTNNAC	2 cut(s)	459, 536
HpyAV	CCTTC	4 cut(s)	180, 339, 358, 403
HpyCH4III	ACNGT	2 cut(s)	202, 406
HpyCH4V	TGCA	6 cut(s)	233, 265, 320, 440, 464, 529
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	152, 162, 348, 457
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	255, 378
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	301
MalI	GATC	2 cut(s)	257, 380
MboI	GATC	2 cut(s)	255, 378
MboII	GAAGA	3 cut(s)	17, 111, 388
MflI	RGATCY	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	6 cut(s)	103, 133, 142, 275, 386, 435
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	40, 75, 187, 300, 537
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	92
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	2 cut(s)	255, 378
NlaIII	CATG	4 cut(s)	152, 162, 348, 457
NlaIV	GGNNCC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	2 cut(s)	152, 457
PciI	ACATGT	2 cut(s)	148, 453
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PscI	ACATGT	2 cut(s)	148, 453
PspN4I	GGNNCC	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	255, 378
SchI	GAGTC	1 cut(s)	541
SetI	ASST	6 cut(s)	23, 246, 311, 331, 414, 548
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	6 cut(s)	103, 133, 142, 275, 386, 435
SsiI	CCGC	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	202, 406
TaqI	TCGA	3 cut(s)	281, 390, 535
TasI	AATT	6 cut(s)	103, 133, 142, 275, 386, 435
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	48, 389, 399, 437
TspRI	CASTG	1 cut(s)	411
XapI	RAATTY	2 cut(s)	142, 386
XceI	RCATGY	2 cut(s)	152, 457
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.