Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

6743949 .. 6744485

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAATCAATCGCCTCCAATTCCTATCACATCAACAGAGAATTCGACCATTGCTGCACCACCAACTGAGAACCAGGAGAACTCAACACCAACAGGTACGAATGAGTTGACTAATGTAAACCGCCCAGGGTTTATGAGAGCACCAAAGTCGGTTGTATGGGATCATTTTGAAAAACAGGTAATTGGTGGTAAAAGAAAAGCTGTGTGCGACCATTGTAAGAAGCAATTGATTTCTGAAAAGAATAGTGGAACTACACACTTACATGATCATATTAAGTCTTGTCTTTACAAGAAACAAAGAACCATAGATCTGTCAATGTTACATCCTACAAAATCTAGTGATGGGTCTACTAAACTGGGCACTTATAGCTTTAACCCAGACAATGCCAGGAAGGAACTTGGACATATGATAATTCTTCATGAGTATCCGTTGTCAATTGTGGATCATGTTGGATTCAGAAGGTATTCTTTTGAACTGCAACCGTACGTTGTTCCTAGTTCCTACTCGAAACACAATCAAGAAAGATATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

178

Amino Acids

20.21

Weight (kDa)

8.93

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	350
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	2 cut(s)	171, 453
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	2 cut(s)	100, 488
AgsI	TTSAA	2 cut(s)	173, 476
AjnI	CCWGG	3 cut(s)	75, 127, 389
AluBI	AGCT	2 cut(s)	203, 372
AluI	AGCT	2 cut(s)	203, 372
Alw21I	GWGCWC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	171, 453
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	3 cut(s)	77, 129, 391
BciVI	GTATCC	1 cut(s)	438
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	2 cut(s)	339, 498
BfuI	GTATCC	1 cut(s)	438
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	77, 129, 391
BmrFI	CCNGG	3 cut(s)	77, 129, 391
BmrI	ACTGGG	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	127, 128
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	77, 129, 391
BseDI	CCNNGG	2 cut(s)	127, 128
BseGI	GGATG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	145
BsiWI	CGTACG	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	145, 365
Bsp143I	GATC	4 cut(s)	163, 268, 310, 445
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	421
BspPI	GGATC	2 cut(s)	171, 453
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	127, 128
BssMI	GATC	4 cut(s)	163, 268, 310, 445
Bst2UI	CCWGG	3 cut(s)	77, 129, 391
Bst4CI	ACNGT	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	4 cut(s)	166, 271, 313, 448
BstMBI	GATC	4 cut(s)	163, 268, 310, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	3 cut(s)	77, 129, 391
BstSCI	CCNGG	3 cut(s)	75, 127, 389
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	325
CciI	TCATGA	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	99, 487
CviAII	CATG	3 cut(s)	266, 422, 449
CviJI	RGCY	2 cut(s)	203, 372
CviKI_1	RGCY	2 cut(s)	203, 372
CviQI	GTAC	2 cut(s)	99, 487
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	4 cut(s)	165, 270, 312, 447
DpnII	GATC	4 cut(s)	163, 268, 310, 445
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	75, 127, 389
FaeI	CATG	3 cut(s)	269, 425, 452
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FatI	CATG	3 cut(s)	265, 421, 448
FauNDI	CATATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	2 cut(s)	339, 498
GluI	GCNGC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	269, 425, 452
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	7, 456
Hpy166II	GTNNAC	3 cut(s)	111, 121, 351
Hpy188I	TCNGA	2 cut(s)	238, 461
Hpy188III	TCNNGA	2 cut(s)	422, 521
Hpy8I	GTNNAC	3 cut(s)	111, 121, 351
HpyAV	CCTTC	2 cut(s)	388, 456
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	2 cut(s)	59, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	269, 425, 452
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	163, 268, 310, 445
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	339, 498
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	4 cut(s)	165, 270, 312, 447
MboI	GATC	4 cut(s)	163, 268, 310, 445
MboII	GAAGA	1 cut(s)	410
MfeI	CAATTG	2 cut(s)	227, 438
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	145, 365
MluCI	AATT	6 cut(s)	21, 43, 183, 227, 414, 438
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	3 cut(s)	276, 375, 535
MslI	CAYNNNNRTG	1 cut(s)	264
MspR9I	CCNGG	3 cut(s)	77, 129, 391
MunI	CAATTG	2 cut(s)	227, 438
MvaI	CCWGG	3 cut(s)	77, 129, 391
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	4 cut(s)	163, 268, 310, 445
NlaIII	CATG	3 cut(s)	269, 425, 452
PagI	TCATGA	1 cut(s)	421
PasI	CCCWGGG	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	7, 456
Pfl23II	CGTACG	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	58
Psp6I	CCWGG	3 cut(s)	75, 127, 389
PspGI	CCWGG	3 cut(s)	75, 127, 389
PspLI	CGTACG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	100, 488
RsaNI	GTAC	2 cut(s)	99, 487
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	276, 375, 535
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	163, 268, 310, 445
ScrFI	CCNGG	3 cut(s)	77, 129, 391
SduI	GDGCHC	2 cut(s)	145, 365
SetI	ASST	6 cut(s)	100, 183, 205, 374, 467, 492
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	6 cut(s)	21, 43, 183, 227, 414, 438
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	2 cut(s)	339, 498
StyD4I	CCNGG	3 cut(s)	75, 127, 389
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	47, 509
TasI	AATT	6 cut(s)	21, 43, 183, 227, 414, 438
TfiI	GAWTC	2 cut(s)	7, 456
Tru1I	TTAA	3 cut(s)	276, 375, 535
Tru9I	TTAA	3 cut(s)	276, 375, 535
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	420
XapI	RAATTY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	2 cut(s)	339, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.