Rw2G006630

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001193
Physical Location & Seq
Forward (+)
6390275 .. 6391217
943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006630.1

Sequence Viewer

Length: 585 bp
ATGGCAATATATGATTGCAGGAATCAGAACAGGTTGAGGTGCAAGCAATGGCATCAAAAATGCTTTTTGTGCCCTTTACTTTATCCCCACAGTAAAGCAACTGCATCAGATGAAACTGAGAGATATAAAAAGATGCTTTATGACGTAGTCAAGGAGTATCAATCTAGATCTAATCATAGTTGTGAAGCATCTCAAGCTCCAATCTCTTCCTCTTCATCAAGGACATCTGCACTTAAACTTGATTTGGTAAAACAATTAGATGTCTTTGTTTCTTCTTCTGCTTCCAATACACATGTTAAGTCTGAGTTAGATCATTATTTAGAGGAAGATATTTTAGCAATTCCTGTCTCGACTGTTGCTTCGGAATCTTGCTTCAGTACTAGTGGAAGGATTATAAGTTCTCATCGTAGCCGACTCCATTCAAAGACAATAGAGGCTTTGATGTGTGCTCGAGATTGGTTATGGAGTGAGATACAAGCATCAAATTCTGAAGAATCTAGAAGAGTTAGTGTTGAAAATGATACTGAGTGTAATGGTGAAGATGAGGTAAATCATATTCATATTCATACTTCTTATTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

194

Amino Acids

22.16

Weight (kDa)

6.19

Isoelectric Point (pI)

73.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 110 - 154 2.6e-15 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 2 cut(s) 358, 510
AfaI GTAC 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 2 cut(s) 423, 515
AhlI ACTAGT 1 cut(s) 380
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 450
ApoI RAATTY 1 cut(s) 484
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
AsuHPI GGTGA 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 352
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 3 cut(s) 165, 381, 498
BglII AGATCT 1 cut(s) 167
BmcAI AGTACT 1 cut(s) 379
BmeT110I CYCGRG 1 cut(s) 450
BmsI GCATC 5 cut(s) 61, 113, 123, 197, 488
BpuEI CTTGAG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 3 cut(s) 108, 294, 516
BseSI GKGCMC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 450
BsmAI GTCTC 1 cut(s) 352
BsoBI CYCGRG 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 74, 451
Bsp143I GATC 2 cut(s) 167, 310
BspCNI CTCAG 3 cut(s) 109, 295, 517
BsrDI GCAATG 1 cut(s) 53
BssMI GATC 2 cut(s) 167, 310
Bst4CI ACNGT 2 cut(s) 92, 355
Bst6I CTCTTC 3 cut(s) 211, 217, 496
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 117, 303, 525
BstKTI GATC 2 cut(s) 170, 313
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 167, 310
BstMWI GCNNNNNNNGC 2 cut(s) 69, 194
BstNSI RCATGY 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 378
CviAII CATG 1 cut(s) 293
CviJI RGCY 3 cut(s) 197, 411, 437
CviKI_1 RGCY 3 cut(s) 197, 411, 437
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 3 cut(s) 117, 303, 525
DpnI GATC 2 cut(s) 169, 312
DpnII GATC 2 cut(s) 167, 310
Eam1104I CTCTTC 3 cut(s) 211, 217, 496
EarI CTCTTC 3 cut(s) 211, 217, 496
Eco57I CTGAAG 2 cut(s) 358, 510
Eco88I CYCGRG 1 cut(s) 450
FaeI CATG 1 cut(s) 296
FatI CATG 1 cut(s) 292
FspBI CTAG 3 cut(s) 165, 381, 498
Hin1II CATG 1 cut(s) 296
HinfI GANTC 4 cut(s) 22, 365, 414, 494
HphI GGTGA 1 cut(s) 548
Hpy188I TCNGA 5 cut(s) 27, 109, 304, 364, 490
Hpy188III TCNNGA 4 cut(s) 165, 349, 452, 498
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 2 cut(s) 92, 355
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 18, 42, 104, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 194
HpyF3I CTNAG 3 cut(s) 117, 303, 525
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 2 cut(s) 167, 310
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 4, 16, 357
LweI GCATC 5 cut(s) 61, 113, 123, 197, 488
MaeI CTAG 3 cut(s) 165, 381, 498
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 169, 312
MboI GATC 2 cut(s) 167, 310
MboII GAAGA 8 cut(s) 198, 204, 264, 267, 338, 503, 513, 551
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 74, 451
MluCI AATT 3 cut(s) 254, 339, 484
MlyI GAGTC 1 cut(s) 408
MnlI CCTC 5 cut(s) 30, 220, 316, 427, 538
MseI TTAA 2 cut(s) 234, 297
MslI CAYNNNNRTG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 69, 194
NdeII GATC 2 cut(s) 167, 310
NlaIII CATG 1 cut(s) 296
NspI RCATGY 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 450
PciI ACATGT 1 cut(s) 292
PfeI GAWTC 3 cut(s) 22, 365, 494
PflFI GACNNNGTC 1 cut(s) 146
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PscI ACATGT 1 cut(s) 292
PsiI TTATAA 1 cut(s) 395
PsuI RGATCY 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 2 cut(s) 234, 297
Sau3AI GATC 2 cut(s) 167, 310
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 1 cut(s) 408
SduI GDGCHC 2 cut(s) 74, 451
SetI ASST 5 cut(s) 35, 41, 147, 199, 549
SfaNI GCATC 5 cut(s) 61, 113, 123, 197, 488
Sfr274I CTCGAG 1 cut(s) 450
SlaI CTCGAG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 192, 450
SmoI CTYRAG 2 cut(s) 192, 450
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 3 cut(s) 254, 339, 484
SspMI CTAG 3 cut(s) 165, 381, 498
TaaI ACNGT 2 cut(s) 92, 355
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 350, 451
TasI AATT 3 cut(s) 254, 339, 484
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 3 cut(s) 22, 365, 494
Tru1I TTAA 2 cut(s) 234, 297
Tru9I TTAA 2 cut(s) 234, 297
TspDTI ATGAA 4 cut(s) 126, 204, 548, 554
Tth111I GACNNNGTC 1 cut(s) 146
XapI RAATTY 1 cut(s) 484
XbaI TCTAGA 2 cut(s) 164, 497
XceI RCATGY 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 450
XspI CTAG 3 cut(s) 165, 381, 498
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.