FvH4_4g15661

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001193
Physical Location & Seq
Reverse (-)
19518337 .. 19520721
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15661.t1

Sequence Viewer

Length: 1401 bp
ATGGCCTCCACACAATCAACAATCACTGATCTTACTGAAAATGCCGAGAATCAAGTTTCCGCAGTAACTGTGAATGAGAAAAACTCTACACCAATAGAGAATGAGAGTAACTCAACACCTGATACAATTACTGATGAGGTACGTCGAAGGAGAAAGCTTTCATCTAAAGTTTGGAACGATTTTGATAAGCAAGTAATTGGTGGTAAAACAAAAGCTATATGTAATCATTGCAAGACTAAGTTATCGGCAGAGAAAAATCATGGGACATCACATTTGCATGATCATTTGAAGTCTTGTCTGTATAAACGGCAAAGAAAGGTAGATCAAGCGATGTTGAATCCTACAAGGTCTACTGATGGGTCAACTAAGATTGGCACTTATAGCTTCGATCCAGACAATGCCAGGAAGGAACTTGGTAATATGATTATTCTTCATGAGTATCCTTTGGCTATGGTTGATCATGTTGGATTCAAAAGGGATGGCTTGGATGTGATCAAAGAAAGTATTGAAAAAATTCGGTCCAGTATTGCATTTTGGACAGCAACACCAAAGAGAGAGGAGAAGTTTGTAGAGGCAGCTAAGCAGTTGAGAGTTCCAAGTACAAAAATGTTAGAGCTCGATTGTAAAACTAGGTGGAACTCGACATATACCATGCTTAACACTGCTATGATCTATAAGGATGTTTTTCCTCGCTTGAAACATCGAGAGCCCTTGTACAAAGATGTGCCCACTGAAGATGATTGGTCAAAAACAAAAGAACTTGTGGAGAAACTGAAGATGTTTCATGATACGACCGAACTATTTTCAGGCAGTGAAGCAACTGCAACAGCTGAGATTGAGAAGTACAAAAGATTACTTTATGACTTAGTGAAAAAATATCAATCCAGATCTCCTCAAAGTAATGGAGCATCACAAGCTCCAAATCCTTCTTCATCTAGAGTGTCCGTGCTTAAACTTGATTTGGTGAAACAACTAGATGTGTTTGTTTCTCATTCTGCTGTGAGCACACATGTTAAATCTGAGTTGGATCATTATCTAGAGGAGTCTCTCTTGCCTATAAATGATTATACTAATTTTGATATATTGTGTTGGTGGAACTCGAATGGGATTAAATATCCCACTTTGCAAGAAATTGCAAGAGATATTTTGGCTATTCCTGTATCAACTGTTGCTTCGGAATCTTGCTTTAGTACTAGCGGAAGAGTTATAAGCTCTCATAGGAGCCGACTTCATGCAAAGACAATAGAGGCACTGATGTGTGCTCGAGATTGGTTATGGAGTGAGATAAGAGTTTCAAACCCTGAAGACTCTAAAATAACCACAGTTCAAGATGATGTTGAATGCAATGTTTCGGATGAGGATCCATCCAAGGAAGAAGAGAACATCACCTTGCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

467

Amino Acids

53.04

Weight (kDa)

6.31

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 341 - 425 7.2e-31 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1208
AccI GTMKAC 1 cut(s) 350
AciI CCGC 2 cut(s) 60, 1197
AclWI GGATC 4 cut(s) 383, 1035, 1355, 1368
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 3 cut(s) 753, 794, 1323
AfaI GTAC 5 cut(s) 141, 601, 716, 845, 1192
AflIII ACRYGT 1 cut(s) 1009
AgsI TTSAA 8 cut(s) 289, 337, 472, 509, 697, 1296, 1328, 1340
AjnI CCWGG 1 cut(s) 401
AjuI GAANNNNNNNTTGG 2 cut(s) 913, 945
AleI CACNNNNGTG 1 cut(s) 1255
AluBI AGCT 8 cut(s) 157, 215, 384, 578, 616, 830, 917, 1212
AluI AGCT 8 cut(s) 157, 215, 384, 578, 616, 830, 917, 1212
Alw21I GWGCWC 3 cut(s) 618, 1007, 1264
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 4 cut(s) 383, 1035, 1355, 1368
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 1263
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 1 cut(s) 513
ArsI GACNNNNNNTTYG 2 cut(s) 256, 288
Asp700I GAANNNNTTC 2 cut(s) 157, 513
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 976, 1378
AvaI CYCGRG 1 cut(s) 1263
AvaII GGWCC 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 729
BamHI GGATCC 1 cut(s) 1360
BanII GRGCYC 2 cut(s) 618, 711
BbsI GAAGAC 1 cut(s) 1311
Bbv12I GWGCWC 3 cut(s) 618, 1007, 1264
BbvI GCAGC 1 cut(s) 587
BccI CCATC 3 cut(s) 350, 473, 1372
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 403
BciVI GTATCC 1 cut(s) 450
BclI TGATCA 3 cut(s) 280, 457, 492
BcoDI GTCTC 1 cut(s) 1050
BfaI CTAG 5 cut(s) 630, 936, 974, 1037, 1194
BfuI GTATCC 1 cut(s) 450
BglII AGATCT 1 cut(s) 887
BisI GCNGC 1 cut(s) 576
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 1192
Bme1390I CCNGG 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 1263
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 2 cut(s) 1223, 1362
BmrFI CCNGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 917
BpiI GAAGAC 1 cut(s) 1311
BplI GAGNNNNNCTC 4 cut(s) 68, 100, 95, 127
Bpu1102I GCTNAGC 1 cut(s) 579
BsaBI GATNNNNATC 2 cut(s) 1032, 1359
BsaJI CCNNGG 1 cut(s) 1368
Bse1I ACTGG 1 cut(s) 522
Bse3DI GCAATG 2 cut(s) 226, 1351
Bse8I GATNNNNATC 2 cut(s) 1032, 1359
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 1368
BseGI GGATG 5 cut(s) 484, 493, 685, 1360, 1364
BseJI GATNNNNATC 2 cut(s) 1032, 1359
BseMI GCAATG 2 cut(s) 226, 1351
BseMII CTCAG 2 cut(s) 822, 1011
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 3 cut(s) 572, 882, 1055
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 3 cut(s) 618, 1007, 1264
BsiHKCI CYCGRG 1 cut(s) 1263
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 1050
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 1346
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 1263
Bsp1286I GDGCHC 5 cut(s) 618, 711, 729, 1007, 1264
Bsp1407I TGTACA 1 cut(s) 714
Bsp1720I GCTNAGC 1 cut(s) 579
BspACI CCGC 2 cut(s) 60, 1197
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 823, 1012
BspHI TCATGA 2 cut(s) 433, 784
BspLI GGNNCC 2 cut(s) 1223, 1362
BspPI GGATC 4 cut(s) 383, 1035, 1355, 1368
BsrDI GCAATG 2 cut(s) 226, 1351
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 1368
BssT1I CCWWGG 1 cut(s) 1368
Bst2UI CCWGG 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 70, 1168, 1324
Bst6I CTCTTC 2 cut(s) 1195, 1371
BstAUI TGTACA 1 cut(s) 714
BstDEI CTNAG 6 cut(s) 237, 366, 579, 831, 865, 1020
BstF5I GGATG 5 cut(s) 484, 493, 685, 1360, 1364
BstMAI GTCTC 1 cut(s) 1050
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 2 cut(s) 381, 914
BstNI CCWGG 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 1013
BstSCI CCNGG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 729
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 1311
BstX2I RGATCY 2 cut(s) 887, 1360
BstYI RGATCY 2 cut(s) 887, 1360
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 5 cut(s) 484, 493, 685, 1360, 1364
BtsI GCAGTG 2 cut(s) 660, 817
BtsIMutI CAGTG 5 cut(s) 24, 660, 729, 817, 1250
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 2 cut(s) 433, 784
Cfr13I GGNCC 1 cut(s) 519
Csp6I GTAC 5 cut(s) 140, 600, 715, 844, 1191
CviAII CATG 8 cut(s) 260, 278, 434, 461, 652, 785, 1010, 1232
CviQI GTAC 5 cut(s) 140, 600, 715, 844, 1191
DdeI CTNAG 6 cut(s) 237, 366, 579, 831, 865, 1020
Eam1104I CTCTTC 2 cut(s) 1195, 1371
EarI CTCTTC 2 cut(s) 1195, 1371
Ecl136II GAGCTC 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 1368
Eco24I GRGCYC 2 cut(s) 618, 711
Eco47I GGWCC 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 616
Eco57I CTGAAG 3 cut(s) 753, 794, 1323
Eco88I CYCGRG 1 cut(s) 1263
EcoICRI GAGCTC 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 1368
EcoT38I GRGCYC 2 cut(s) 618, 711
ErhI CCWWGG 1 cut(s) 1368
FaeI CATG 8 cut(s) 263, 281, 437, 464, 655, 788, 1013, 1235
FaqI GGGAC 1 cut(s) 277
FatI CATG 8 cut(s) 259, 277, 433, 460, 651, 784, 1009, 1231
FbaI TGATCA 3 cut(s) 280, 457, 492
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 5 cut(s) 491, 500, 692, 1351, 1367
FriOI GRGCYC 2 cut(s) 618, 711
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 5 cut(s) 630, 936, 974, 1037, 1194
GluI GCNGC 1 cut(s) 576
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 8 cut(s) 263, 281, 437, 464, 655, 788, 1013, 1235
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 6 cut(s) 49, 337, 468, 1043, 1178, 1307
HphI GGTGA 2 cut(s) 976, 1378
Hpy166II GTNNAC 2 cut(s) 351, 363
Hpy188I TCNGA 3 cut(s) 1021, 1177, 1354
Hpy188III TCNNGA 9 cut(s) 392, 434, 704, 785, 885, 936, 1037, 1265, 1328
Hpy8I GTNNAC 2 cut(s) 351, 363
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 3 cut(s) 141, 400, 936
HpyCH4III ACNGT 3 cut(s) 70, 1168, 1324
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 8 cut(s) 231, 277, 530, 824, 1126, 1136, 1235, 1344
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 914
HpyF3I CTNAG 6 cut(s) 237, 366, 579, 831, 865, 1020
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 8 cut(s) 263, 281, 437, 464, 655, 788, 1013, 1235
Ksp22I TGATCA 3 cut(s) 280, 457, 492
LmnI GCTCC 3 cut(s) 905, 922, 1221
LpnPI CCDG 9 cut(s) 132, 388, 405, 415, 535, 792, 898, 1170, 1314
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 917
MaeI CTAG 5 cut(s) 630, 936, 974, 1037, 1194
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 64, 107
MboII GAAGA 8 cut(s) 422, 746, 787, 921, 1212, 1316, 1385, 1388
MflI RGATCY 2 cut(s) 887, 1360
MhlI GDGCHC 5 cut(s) 618, 711, 729, 1007, 1264
MluCI AATT 5 cut(s) 126, 195, 513, 1072, 1131
MlyI GAGTC 2 cut(s) 1052, 1301
MmeI TCCRAC 2 cut(s) 445, 1005
MnlI CCTC 9 cut(s) 16, 130, 550, 565, 699, 903, 1033, 1240, 1351
MroXI GAANNNNTTC 2 cut(s) 157, 513
MseI TTAA 4 cut(s) 657, 951, 1014, 1110
MslI CAYNNNNRTG 3 cut(s) 276, 665, 1255
MspA1I CMGCKG 1 cut(s) 830
MspR9I CCNGG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 1346
MvaI CCWGG 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 381, 914
NlaIII CATG 8 cut(s) 263, 281, 437, 464, 655, 788, 1013, 1235
NlaIV GGNNCC 2 cut(s) 1223, 1362
NmeAIII GCCGAG 1 cut(s) 70
NspI RCATGY 1 cut(s) 1013
OliI CACNNNNGTG 1 cut(s) 1255
PaeR7I CTCGAG 1 cut(s) 1263
PagI TCATGA 2 cut(s) 433, 784
PciI ACATGT 1 cut(s) 1009
PctI GAATGC 1 cut(s) 1346
PdmI GAANNNNTTC 2 cut(s) 157, 513
PfeI GAWTC 4 cut(s) 49, 337, 468, 1178
PkrI GCNGC 1 cut(s) 577
PleI GAGTC 2 cut(s) 1051, 1301
PpsI GAGTC 2 cut(s) 1051, 1301
PscI ACATGT 1 cut(s) 1009
PsiI TTATAA 1 cut(s) 1208
Psp124BI GAGCTC 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 1223, 1362
PspPI GGNCC 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 2 cut(s) 887, 1360
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 5 cut(s) 141, 601, 716, 845, 1192
RsaNI GTAC 5 cut(s) 140, 600, 715, 844, 1191
RseI CAYNNNNRTG 3 cut(s) 276, 665, 1255
SacI GAGCTC 1 cut(s) 618
SaqAI TTAA 4 cut(s) 657, 951, 1014, 1110
SatI GCNGC 1 cut(s) 576
Sau96I GGNCC 1 cut(s) 519
ScaI AGTACT 1 cut(s) 1192
SchI GAGTC 2 cut(s) 1052, 1301
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 5 cut(s) 618, 711, 729, 1007, 1264
SfaNI GCATC 1 cut(s) 917
Sfr274I CTCGAG 1 cut(s) 1263
SinI GGWCC 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 1263
SmiMI CAYNNNNRTG 3 cut(s) 276, 665, 1255
SmlI CTYRAG 2 cut(s) 1263, 1394
SmoI CTYRAG 2 cut(s) 1263, 1394
Sse9I AATT 5 cut(s) 126, 195, 513, 1072, 1131
SsiI CCGC 2 cut(s) 60, 1197
SspMI CTAG 5 cut(s) 630, 936, 974, 1037, 1194
SstI GAGCTC 1 cut(s) 618
StyD4I CCNGG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 1368
TaaI ACNGT 3 cut(s) 70, 1168, 1324
TaiI ACGT 1 cut(s) 145
TaqI TCGA 7 cut(s) 145, 387, 618, 641, 703, 1100, 1264
TaqII GACCGA 2 cut(s) 507, 809
TasI AATT 5 cut(s) 126, 195, 513, 1072, 1131
TatI WGTACW 4 cut(s) 599, 714, 843, 1190
TfiI GAWTC 4 cut(s) 49, 337, 468, 1178
Tru1I TTAA 4 cut(s) 657, 951, 1014, 1110
Tru9I TTAA 4 cut(s) 657, 951, 1014, 1110
TscAI CASTG 5 cut(s) 31, 667, 736, 817, 1257
TseI GCWGC 1 cut(s) 575
TspDTI ATGAA 5 cut(s) 150, 422, 773, 921, 1220
TspGWI ACGGA 1 cut(s) 934
TspRI CASTG 5 cut(s) 31, 667, 736, 817, 1257
VpaK11BI GGWCC 1 cut(s) 519
XapI RAATTY 1 cut(s) 513
XbaI TCTAGA 2 cut(s) 935, 1036
XceI RCATGY 1 cut(s) 1013
XhoI CTCGAG 1 cut(s) 1263
XmiI GTMKAC 1 cut(s) 350
XmnI GAANNNNTTC 2 cut(s) 157, 513
XspI CTAG 5 cut(s) 630, 936, 974, 1037, 1194
ZrmI AGTACT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.