Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Forward (+)

16156501 .. 16168666

Gene Structure 12166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG158300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCATTATTCATGATCGAGAAAAGTCGGGATGAAACTCAGGAAGGTGTGATAAAAGTAGAGTTACGAATTGAAACGGCTATAGATTGTGACCTGTTTGCTGCGGATAGCTTCCACTTTGCAGAAGCTAAGCCCAGCTTTAACATGCAGACTAGGGTGCAAAGTGTGAGTCAGAGACTCAAATGGAAGGTGGCAAGTGCCAAGTCGATGTCTGATATTTCAGTTGAAGCCTTAAGCTGGGTACGTATTTACCACGTGTCCCTGGGCTTCATTGGCTGGGGGTTCTATTCCATCTTGGCTCTCACCAGCTTGAACTCGTACTCAAGTTTCTCTAAGTATGGAAGATATGTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.43

Weight (kDa)

7.85

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	2 cut(s)	243, 320
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflII	CTTAAG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	74, 227, 313
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	111, 128, 138, 237, 309
AluI	AGCT	5 cut(s)	111, 128, 138, 237, 309
Alw26I	GTCTC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AsuHPI	GGTGA	1 cut(s)	295
BbrPI	CACGTG	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	307
BsaAI	YACGTR	2 cut(s)	245, 256
BsaJI	CCNNGG	2 cut(s)	261, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	261, 262
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	3 cut(s)	134, 237, 276
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	261, 262
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	232
BstBAI	YACGTR	2 cut(s)	245, 256
BstDEI	CTNAG	3 cut(s)	39, 129, 333
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	81
BstSNI	TACGTA	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	37
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	242, 319
CviAII	CATG	2 cut(s)	13, 145
CviQI	GTAC	2 cut(s)	242, 319
DdeI	CTNAG	3 cut(s)	39, 129, 333
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco105I	TACGTA	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	16, 148
FaiI	YATR	7 cut(s)	14, 83, 146, 339, 348, 353, 355
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	12, 144
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	3 cut(s)	138, 241, 280
Hin1II	CATG	2 cut(s)	16, 148
HinfI	GANTC	2 cut(s)	169, 177
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	174, 214
Hpy188III	TCNNGA	4 cut(s)	13, 19, 29, 41
HpyAV	CCTTC	2 cut(s)	38, 181
HpyCH4IV	ACGT	2 cut(s)	244, 255
HpyCH4V	TGCA	3 cut(s)	122, 148, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	3 cut(s)	39, 129, 333
HpySE526I	ACGT	2 cut(s)	244, 255
Hsp92II	CATG	2 cut(s)	16, 148
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	8 cut(s)	26, 107, 148, 223, 248, 262, 275, 319
Lsp1109I	GCAGC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	244, 255
MaeIII	GTNAC	2 cut(s)	63, 89
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	354
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	171, 178
MseI	TTAA	2 cut(s)	141, 233
MspCI	CTTAAG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	273
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	16, 148
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	1 cut(s)	12
PasI	CCCWGGG	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	171, 177
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	2 cut(s)	171, 177
Ppu21I	YACGTR	2 cut(s)	245, 256
Psp6I	CCWGG	1 cut(s)	261
PspCI	CACGTG	1 cut(s)	256
PspFI	CCCAGC	3 cut(s)	134, 237, 276
PspGI	CCWGG	1 cut(s)	261
RsaI	GTAC	2 cut(s)	243, 320
RsaNI	GTAC	2 cut(s)	242, 319
SaqAI	TTAA	2 cut(s)	141, 233
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	2 cut(s)	171, 178
ScrFI	CCNGG	1 cut(s)	263
SfcI	CTRYAG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	232, 322
SmoI	CTYRAG	2 cut(s)	232, 322
SnaBI	TACGTA	1 cut(s)	245
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	261
TaiI	ACGT	2 cut(s)	247, 258
TaqI	TCGA	2 cut(s)	18, 206
TasI	AATT	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	141, 233
Tru9I	TTAA	2 cut(s)	141, 233
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	48, 259
Vha464I	CTTAAG	1 cut(s)	232
XceI	RCATGY	1 cut(s)	148
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.