FvH4_1g23531

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001193
Physical Location & Seq
Forward (+)
15372591 .. 15374652
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23531.t1

Sequence Viewer

Length: 1095 bp
ATGTTGAATCCTACAAGGTCTACTGATGGGTCAACTAAGATTGGCACTTATAGCTTCGATCCAGACAATGCCAGGAGGGAACTTGGTAATATGATTATTCTTCATGAGTATCCTTTGGCTATGGTTGATCATGTTGGATTCAAAAGGTTTATATATGTACCATGTCCGCACACTGCTGATGTACTTGCCGATGCTTTGGTGAATTGCTTATTTGATTGGAATCTTGACCGTAAGTTGTCTACGTTAACTGTAGATAATTGCACTACTAATGATGCCATGCTCGATAAGATTATCGAAAAGATTCATGCTACTTCACTTTTGTTGGATGGAAGTTTATTTCACATGCGTTGTTGCGCCCATATATTGAACCTTATTGTTAGGGATGGCTTGGATGTGATCAAAGAAAGTATTGAAAAAATTCGGTCCAGTATTGCATTTTGGACAGCAACACCAAAGAGAGAGGAGAAGTTTGTAGAGGCAGCTAAGCAGTTGAGAGTTCCAAGCAGTGAAGCAACTGCAACAGCTGAGATTGAGAAGTACAAAAGATTACTTTATGACTTAGTGAAAGAATATCAGTCCAGATCTCCTCAAAGTAATGGAGCATCACAAGCTCCAAATCCTTCTTCATCTAGAGTGTCCGTGCTTAAACTTGATTTGGTGAAACAACTAGATGTGTTTGTTTCTCATTCTGCTGTGAGCACACATGTTAAATCTGAGTTGGATCATTATCTAGAGGAGTCTCTCTTGCCTATAAATGATTATACTAATTTTGATATATTGTGTTGGTGGAACTCGAATGGGATTAAATATCCCACTTTGCAAGAAATTGCAAGAGATATTTTGGCTATTCCTGTATCAACTGTTGCTTCGGAATCTTGCTTTAGTACTAGCGGAAGAGTTATAAGCTCTCATAGGAGCCGACTTCATGCAAAGACAATAGAGGCACTGATGTGTGCTCGAGATTGGTTATGGAGTGAGATAAGAGTTTCAAACCCTGAAGACTCTAAAATAACCACAGTTCAAGATGATGTTGAATGCAATGTTTCGGATGAGGATCCATCCAAGGAAGAAGAGAACGTCACCTTGCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

365

Amino Acids

41.04

Weight (kDa)

5.3

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 239 - 323 4.8e-31 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AccI GTMKAC 2 cut(s) 20, 239
AciI CCGC 2 cut(s) 167, 891
AclWI GGATC 4 cut(s) 53, 729, 1049, 1062
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 1017
AfaI GTAC 4 cut(s) 159, 183, 539, 886
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 7 cut(s) 7, 142, 367, 413, 990, 1022, 1034
AjnI CCWGG 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AleI CACNNNNGTG 1 cut(s) 949
AluBI AGCT 5 cut(s) 54, 482, 524, 611, 906
AluI AGCT 5 cut(s) 54, 482, 524, 611, 906
Alw21I GWGCWC 2 cut(s) 701, 958
Alw26I GTCTC 1 cut(s) 744
AlwI GGATC 4 cut(s) 53, 729, 1049, 1062
Ama87I CYCGRG 1 cut(s) 957
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 417
Asp700I GAANNNNTTC 2 cut(s) 300, 417
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 211, 670, 1072
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 1 cut(s) 423
BamHI GGATCC 1 cut(s) 1054
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 701, 958
BbvI GCAGC 1 cut(s) 491
BccI CCATC 4 cut(s) 20, 320, 377, 1066
BciT130I CCWGG 1 cut(s) 73
BciVI GTATCC 1 cut(s) 120
BclI TGATCA 2 cut(s) 127, 396
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 4 cut(s) 630, 668, 731, 888
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 1 cut(s) 120
BglII AGATCT 1 cut(s) 581
BisI GCNGC 1 cut(s) 480
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 481
BmcAI AGTACT 1 cut(s) 886
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 423
BmeT110I CYCGRG 1 cut(s) 957
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 917, 1056
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 3 cut(s) 181, 262, 611
BpiI GAAGAC 1 cut(s) 1005
Bpu1102I GCTNAGC 1 cut(s) 483
BsaBI GATNNNNATC 3 cut(s) 219, 726, 1053
BsaJI CCNNGG 1 cut(s) 1062
Bse1I ACTGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 1045
Bse8I GATNNNNATC 3 cut(s) 219, 726, 1053
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 1062
BseGI GGATG 5 cut(s) 331, 388, 397, 1054, 1058
BseJI GATNNNNATC 3 cut(s) 219, 726, 1053
BseMI GCAATG 1 cut(s) 1045
BseMII CTCAG 2 cut(s) 516, 705
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 3 cut(s) 476, 576, 749
BseXI GCAGC 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 701, 958
BsiHKCI CYCGRG 1 cut(s) 957
BsmAI GTCTC 1 cut(s) 744
BsmI GAATGC 1 cut(s) 1040
BsoBI CYCGRG 1 cut(s) 957
Bsp1286I GDGCHC 2 cut(s) 701, 958
Bsp143I GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 2 cut(s) 167, 891
BspCNI CTCAG 2 cut(s) 517, 706
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 917, 1056
BspPI GGATC 4 cut(s) 53, 729, 1049, 1062
BsrDI GCAATG 1 cut(s) 1045
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 1062
BssMI GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
BssT1I CCWWGG 1 cut(s) 1062
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 4 cut(s) 230, 250, 862, 1018
Bst6I CTCTTC 2 cut(s) 889, 1065
BstDEI CTNAG 5 cut(s) 36, 483, 525, 559, 714
BstF5I GGATG 5 cut(s) 331, 388, 397, 1054, 1058
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 6 cut(s) 61, 130, 399, 584, 724, 1057
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 51, 608
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 2 cut(s) 346, 707
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 491
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 2 cut(s) 581, 1054
BstYI RGATCY 2 cut(s) 581, 1054
BsuI GTATCC 1 cut(s) 120
BtsCI GGATG 5 cut(s) 331, 388, 397, 1054, 1058
BtsI GCAGTG 2 cut(s) 171, 511
BtsIMutI CAGTG 3 cut(s) 171, 511, 944
CciI TCATGA 1 cut(s) 103
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 423
Csp6I GTAC 4 cut(s) 158, 182, 538, 885
CviAII CATG 8 cut(s) 104, 131, 162, 277, 305, 343, 704, 926
CviJI RGCY 9 cut(s) 54, 119, 387, 482, 524, 611, 845, 906, 918
CviKI_1 RGCY 9 cut(s) 54, 119, 387, 482, 524, 611, 845, 906, 918
CviQI GTAC 4 cut(s) 158, 182, 538, 885
DdeI CTNAG 5 cut(s) 36, 483, 525, 559, 714
DpnI GATC 6 cut(s) 60, 129, 398, 583, 723, 1056
DpnII GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
Eam1104I CTCTTC 2 cut(s) 889, 1065
EarI CTCTTC 2 cut(s) 889, 1065
Eco130I CCWWGG 1 cut(s) 1062
Eco47I GGWCC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 1017
Eco88I CYCGRG 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1062
FaeI CATG 8 cut(s) 107, 134, 165, 280, 308, 346, 707, 929
FatI CATG 8 cut(s) 103, 130, 161, 276, 304, 342, 703, 925
FbaI TGATCA 2 cut(s) 127, 396
FblI GTMKAC 2 cut(s) 20, 239
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 5 cut(s) 338, 395, 404, 1045, 1061
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 4 cut(s) 630, 668, 731, 888
GlaI GCGC 1 cut(s) 355
GluI GCNGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 356
Hin1II CATG 8 cut(s) 107, 134, 165, 280, 308, 346, 707, 929
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 2 cut(s) 33, 246
HindII GTYRAC 2 cut(s) 33, 246
HinfI GANTC 7 cut(s) 7, 138, 220, 301, 737, 872, 1001
HpaI GTTAAC 1 cut(s) 246
HphI GGTGA 3 cut(s) 211, 670, 1072
Hpy166II GTNNAC 4 cut(s) 21, 33, 240, 246
Hpy188I TCNGA 3 cut(s) 715, 871, 1048
Hpy188III TCNNGA 8 cut(s) 62, 104, 224, 579, 630, 731, 959, 1022
Hpy8I GTNNAC 4 cut(s) 21, 33, 240, 246
HpyAV CCTTC 1 cut(s) 630
HpyCH4III ACNGT 4 cut(s) 230, 250, 862, 1018
HpyCH4IV ACGT 2 cut(s) 242, 1077
HpyCH4V TGCA 7 cut(s) 261, 434, 518, 820, 830, 929, 1038
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 608
HpyF3I CTNAG 5 cut(s) 36, 483, 525, 559, 714
HpySE526I ACGT 2 cut(s) 242, 1077
Hsp92II CATG 8 cut(s) 107, 134, 165, 280, 308, 346, 707, 929
HspAI GCGC 1 cut(s) 354
Ksp22I TGATCA 2 cut(s) 127, 396
KspAI GTTAAC 1 cut(s) 246
Kzo9I GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
LmnI GCTCC 3 cut(s) 599, 616, 915
LpnPI CCDG 7 cut(s) 58, 75, 85, 439, 592, 864, 1008
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 3 cut(s) 181, 262, 611
MaeI CTAG 4 cut(s) 630, 668, 731, 888
MaeII ACGT 2 cut(s) 242, 1077
MaeIII GTNAC 1 cut(s) 1078
MalI GATC 6 cut(s) 60, 129, 398, 583, 723, 1056
MboI GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
MboII GAAGA 6 cut(s) 92, 615, 906, 1010, 1079, 1082
MflI RGATCY 2 cut(s) 581, 1054
MhlI GDGCHC 2 cut(s) 701, 958
MluCI AATT 5 cut(s) 202, 256, 417, 766, 825
MlyI GAGTC 2 cut(s) 746, 995
MmeI TCCRAC 3 cut(s) 115, 303, 699
MnlI CCTC 7 cut(s) 69, 454, 469, 597, 727, 934, 1045
MroXI GAANNNNTTC 2 cut(s) 300, 417
MseI TTAA 4 cut(s) 245, 645, 708, 804
MslI CAYNNNNRTG 1 cut(s) 949
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 1040
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 51, 608
NdeII GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
NlaIII CATG 8 cut(s) 107, 134, 165, 280, 308, 346, 707, 929
NlaIV GGNNCC 2 cut(s) 917, 1056
NmuCI GTSAC 1 cut(s) 1078
NspI RCATGY 2 cut(s) 346, 707
OliI CACNNNNGTG 1 cut(s) 949
PaeR7I CTCGAG 1 cut(s) 957
PagI TCATGA 1 cut(s) 103
PciI ACATGT 1 cut(s) 703
PctI GAATGC 1 cut(s) 1040
PdmI GAANNNNTTC 2 cut(s) 300, 417
PfeI GAWTC 5 cut(s) 7, 138, 220, 301, 872
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 2 cut(s) 745, 995
PpsI GAGTC 2 cut(s) 745, 995
PscI ACATGT 1 cut(s) 703
PsiI TTATAA 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 917, 1056
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 2 cut(s) 581, 1054
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 4 cut(s) 159, 183, 539, 886
RsaNI GTAC 4 cut(s) 158, 182, 538, 885
RseI CAYNNNNRTG 1 cut(s) 949
SaqAI TTAA 4 cut(s) 245, 645, 708, 804
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 6 cut(s) 58, 127, 396, 581, 721, 1054
Sau96I GGNCC 1 cut(s) 423
ScaI AGTACT 1 cut(s) 886
SchI GAGTC 2 cut(s) 746, 995
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 2 cut(s) 701, 958
SfaNI GCATC 3 cut(s) 181, 262, 611
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 957
SmiMI CAYNNNNRTG 1 cut(s) 949
SmlI CTYRAG 2 cut(s) 957, 1088
SmoI CTYRAG 2 cut(s) 957, 1088
Sse9I AATT 5 cut(s) 202, 256, 417, 766, 825
SsiI CCGC 2 cut(s) 167, 891
SspMI CTAG 4 cut(s) 630, 668, 731, 888
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 4 cut(s) 230, 250, 862, 1018
TaiI ACGT 2 cut(s) 245, 1080
TaqI TCGA 5 cut(s) 57, 282, 294, 794, 958
TaqII GACCGA 1 cut(s) 411
TasI AATT 5 cut(s) 202, 256, 417, 766, 825
TatI WGTACW 3 cut(s) 181, 537, 884
TfiI GAWTC 5 cut(s) 7, 138, 220, 301, 872
Tru1I TTAA 4 cut(s) 245, 645, 708, 804
Tru9I TTAA 4 cut(s) 245, 645, 708, 804
TscAI CASTG 3 cut(s) 178, 511, 951
TseFI GTSAC 1 cut(s) 1078
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 1078
TspDTI ATGAA 4 cut(s) 92, 293, 615, 914
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 3 cut(s) 178, 511, 951
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 1 cut(s) 417
XbaI TCTAGA 2 cut(s) 629, 730
XceI RCATGY 2 cut(s) 346, 707
XhoI CTCGAG 1 cut(s) 957
XmiI GTMKAC 2 cut(s) 20, 239
XmnI GAANNNNTTC 2 cut(s) 300, 417
XspI CTAG 4 cut(s) 630, 668, 731, 888
ZrmI AGTACT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.