RLG00000009803

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001193
Physical Location & Seq
Reverse (-)
58165423 .. 58166713
1291 bp
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UTR
Exon/CDS
Intron
RLM00000009803

Sequence Viewer

Length: 324 bp
ATGCAATTTGCCATGCTTGATTTGATTTTCAGGAATATGGAAGATATGTCGTATAGCTGTGCTAATAATGAAATAATGGATGAGGATGTGGAACAAAGTGTTCCACACAAAAGAAAGAGGAAAGCAGCAGTATGGGATAATTTTGAAGAAAAAGTGATCAAGGGGGAAGAGAAAGCAATTTGTAAGCATTGCGGCAAGATCCTAAGTGCAAAGTCTTCAAATGGAACTAATTCCTTGAATTTACATGTTAAATCATGTAAAGGACTAAAGCCCCAATCAACAAGGAGCGAGGGGATATGGTGGATTCTTAGACAGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

8.95

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 44 - 86 1.6e-06 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 146, 219, 238
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AlwI GGATC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 137
BclI TGATCA 1 cut(s) 156
BisI GCNGC 2 cut(s) 126, 193
BlsI GCNGC 2 cut(s) 127, 194
BpiI GAAGAC 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 187
BseGI GGATG 2 cut(s) 85, 91
BseMI GCAATG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 156, 198
BspACI CCGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 187
BssMI GATC 2 cut(s) 156, 198
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 203, 308
BstF5I GGATG 2 cut(s) 85, 91
BstKTI GATC 2 cut(s) 159, 201
BstMBI GATC 2 cut(s) 156, 198
BstNSI RCATGY 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtsCI GGATG 2 cut(s) 85, 91
CviAII CATG 3 cut(s) 13, 245, 255
CviJI RGCY 2 cut(s) 57, 271
CviKI_1 RGCY 2 cut(s) 57, 271
DdeI CTNAG 2 cut(s) 203, 308
DpnI GATC 2 cut(s) 158, 200
DpnII GATC 2 cut(s) 156, 198
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
FaeI CATG 3 cut(s) 16, 248, 258
FaiI YATR 8 cut(s) 14, 38, 47, 54, 133, 246, 256, 298
FatI CATG 3 cut(s) 12, 244, 254
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 126, 193
FokI GGATG 2 cut(s) 92, 98
Fsp4HI GCNGC 2 cut(s) 126, 193
GluI GCNGC 2 cut(s) 126, 193
Hin1II CATG 3 cut(s) 16, 248, 258
HinfI GANTC 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 4, 209
HpyF3I CTNAG 2 cut(s) 203, 308
Hsp92II CATG 3 cut(s) 16, 248, 258
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 2 cut(s) 156, 198
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 137
MalI GATC 2 cut(s) 158, 200
MboI GATC 2 cut(s) 156, 198
MboII GAAGA 4 cut(s) 53, 158, 179, 207
MflI RGATCY 1 cut(s) 198
MluCI AATT 5 cut(s) 5, 139, 177, 229, 238
MnlI CCTC 3 cut(s) 76, 111, 283
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 249
NdeII GATC 2 cut(s) 156, 198
NlaIII CATG 3 cut(s) 16, 248, 258
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 127, 194
PscI ACATGT 1 cut(s) 244
PsuI RGATCY 1 cut(s) 198
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 126, 193
Sau3AI GATC 2 cut(s) 156, 198
SetI ASST 1 cut(s) 59
Sse9I AATT 5 cut(s) 5, 139, 177, 229, 238
SsiI CCGC 1 cut(s) 192
TasI AATT 5 cut(s) 5, 139, 177, 229, 238
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 84
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.