Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Forward (+)

6451037 .. 6454061

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACGTTGTTGTGCGGTGGTGGAGGTTGTTGTGGTCAAGTCATTGGCGACGGCGGCGGGGATGAACTCGGAGTGTGCGAACCAGAACCAATACCATATCAACATGAGCATCTGTCTCATATCAAGGATCCGGATGTGAATGTGACCCGGGTCCCAAATACGGATCCAAATCCTGCCCGAGACCAAAGTCAAATCTGCCAAAGGAAACTTGACAAAAGCCCAAGCCCATTTGAATCTGATTTGGACACCCCAAGTACGTGGGCACCCTATCGGATCTTCTCTGGACACCCACCTGTCTATGCTCCCACCGCAGCCGTCGAATGTCACCGATGGAAGGACCCACGGAGACGCCTCCACCATCCGCACGTAGCCCCGGCACTCCTCGTCCTGTTCCACCGCTCCACAACTCGGAAAACTCTTTGTTGGGAGGACATGGCACCACCGTCATCCGTCCCACCAAGCCGCATCGCTGCGCCGCTAATAGAGCCGGACCGACAACGGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.62

Weight (kDa)

6.49

Isoelectric Point (pI)

68.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	262, 436
AccBSI	CCGCTC	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	8 cut(s)	15, 54, 57, 309, 362, 397, 463, 476
AclWI	GGATC	5 cut(s)	122, 135, 158, 171, 281
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	3 cut(s)	160, 334, 408
AgsI	TTSAA	1 cut(s)	233
Alw26I	GTCTC	3 cut(s)	120, 174, 340
AlwI	GGATC	5 cut(s)	122, 135, 158, 171, 281
Ama87I	CYCGRG	2 cut(s)	147, 177
Aor13HI	TCCGGA	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	311, 470
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	3 cut(s)	151, 337, 490
AsuC2I	CCSGG	3 cut(s)	148, 149, 374
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	2 cut(s)	147, 177
AvaII	GGWCC	3 cut(s)	151, 337, 490
BaeGI	GKGCMC	1 cut(s)	265
BamHI	GGATCC	2 cut(s)	127, 163
BanI	GGYRCC	2 cut(s)	262, 436
BbvI	GCAGC	2 cut(s)	323, 457
BccI	CCATC	2 cut(s)	324, 366
BceAI	ACGGC	2 cut(s)	67, 299
BcnI	CCSGG	3 cut(s)	148, 149, 374
BcoDI	GTCTC	3 cut(s)	120, 174, 340
BfaI	CTAG	1 cut(s)	505
BisI	GCNGC	5 cut(s)	55, 312, 463, 471, 476
BlsI	GCNGC	5 cut(s)	56, 313, 464, 472, 477
Bme1390I	CCNGG	3 cut(s)	148, 149, 374
Bme18I	GGWCC	3 cut(s)	151, 337, 490
BmeT110I	CYCGRG	2 cut(s)	147, 177
BmgT120I	GGNCC	3 cut(s)	151, 337, 490
BmiI	GGNNCC	7 cut(s)	129, 152, 153, 165, 264, 339, 438
BmrFI	CCNGG	3 cut(s)	148, 149, 374
BmsI	GCATC	2 cut(s)	118, 474
BoxI	GACNNNNGTC	2 cut(s)	149, 186
BpuMI	CCSGG	3 cut(s)	148, 149, 374
BsaAI	YACGTR	2 cut(s)	258, 367
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	147, 341, 372
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 334, 408
Bse8I	GATNNNNATC	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	147, 341, 372
BseGI	GGATG	4 cut(s)	67, 139, 358, 446
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	160, 334, 408
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	323, 457
BshNI	GGYRCC	2 cut(s)	262, 436
BsiHKCI	CYCGRG	2 cut(s)	147, 177
BsiSI	CCGG	4 cut(s)	131, 148, 374, 488
BslFI	GGGAC	2 cut(s)	137, 437
BslI	CCNNNNNNNGG	3 cut(s)	160, 334, 408
BsmAI	GTCTC	3 cut(s)	120, 174, 340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	137, 437
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	2 cut(s)	147, 177
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	127, 163, 273, 501
BspACI	CCGC	8 cut(s)	15, 54, 57, 309, 362, 397, 463, 476
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	7 cut(s)	129, 152, 153, 165, 264, 339, 438
BspPI	GGATC	5 cut(s)	122, 135, 158, 171, 281
BspT107I	GGYRCC	2 cut(s)	262, 436
BspTNI	GGTCTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	147, 341, 372
BssMI	GATC	4 cut(s)	127, 163, 273, 501
BssNI	GRCGYC	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	349
BstBAI	YACGTR	2 cut(s)	258, 367
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	67, 139, 358, 446
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	130, 166, 276, 504
BstMAI	GTCTC	3 cut(s)	120, 174, 340
BstMBI	GATC	4 cut(s)	127, 163, 273, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 308, 484
BstPAI	GACNNNNGTC	2 cut(s)	149, 186
BstSCI	CCNGG	3 cut(s)	146, 147, 372
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	323, 457
BstX2I	RGATCY	4 cut(s)	127, 163, 273, 501
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	4 cut(s)	127, 163, 273, 501
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	4 cut(s)	67, 139, 358, 446
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	3 cut(s)	151, 337, 490
Cfr9I	CCCGGG	1 cut(s)	147
CpoI	CGGWCCG	1 cut(s)	490
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	255
CspI	CGGWCCG	1 cut(s)	490
CviAII	CATG	2 cut(s)	104, 433
CviJI	RGCY	6 cut(s)	219, 225, 314, 371, 462, 487
CviKI_1	RGCY	6 cut(s)	219, 225, 314, 371, 462, 487
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	4 cut(s)	129, 165, 275, 503
DpnII	GATC	4 cut(s)	127, 163, 273, 501
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	3 cut(s)	151, 337, 490
Eco88I	CYCGRG	2 cut(s)	147, 177
EcoO109I	RGGNCCY	2 cut(s)	151, 337
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	2 cut(s)	107, 436
FaiI	YATR	5 cut(s)	97, 105, 120, 300, 434
FaqI	GGGAC	2 cut(s)	137, 437
FatI	CATG	2 cut(s)	103, 432
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	5 cut(s)	55, 312, 463, 471, 476
FokI	GGATG	4 cut(s)	74, 146, 345, 433
Fsp4HI	GCNGC	5 cut(s)	55, 312, 463, 471, 476
FspBI	CTAG	1 cut(s)	505
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	55, 312, 463, 471, 476
HapII	CCGG	4 cut(s)	131, 148, 374, 488
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	107, 436
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	4 cut(s)	131, 148, 374, 488
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	4 cut(s)	71, 238, 273, 411
Hpy188III	TCNNGA	2 cut(s)	131, 282
Hpy99I	CGWCG	2 cut(s)	53, 320
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	3 cut(s)	5, 257, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 308, 484
HpySE526I	ACGT	3 cut(s)	5, 257, 366
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	107, 436
HspAI	GCGC	1 cut(s)	473
KflI	GGGWCCC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	127, 163, 273, 501
LmnI	GCTCC	2 cut(s)	307, 404
LpnPI	CCDG	9 cut(s)	96, 144, 161, 186, 267, 306, 387, 401, 501
Lsp1109I	GCAGC	2 cut(s)	323, 457
LweI	GCATC	2 cut(s)	118, 474
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	3 cut(s)	5, 257, 366
MaeIII	GTNAC	2 cut(s)	142, 323
MalI	GATC	4 cut(s)	129, 165, 275, 503
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	4 cut(s)	127, 163, 273, 501
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	4 cut(s)	127, 163, 273, 501
MhlI	GDGCHC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	17, 362, 392, 421
MroI	TCCGGA	1 cut(s)	130
MspI	CCGG	4 cut(s)	131, 148, 374, 488
MspR9I	CCNGG	3 cut(s)	148, 149, 374
MwoI	GCNNNNNNNGC	3 cut(s)	54, 308, 484
NciI	CCSGG	3 cut(s)	148, 149, 374
NdeII	GATC	4 cut(s)	127, 163, 273, 501
NlaIII	CATG	2 cut(s)	107, 436
NlaIV	GGNNCC	7 cut(s)	129, 152, 153, 165, 264, 339, 438
NmuCI	GTSAC	2 cut(s)	142, 323
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	56, 313, 464, 472, 477
Ppu21I	YACGTR	2 cut(s)	258, 367
PpuMI	RGGWCCY	2 cut(s)	151, 337
PshAI	GACNNNNGTC	2 cut(s)	149, 186
Psp5II	RGGWCCY	2 cut(s)	151, 337
PspN4I	GGNNCC	7 cut(s)	129, 152, 153, 165, 264, 339, 438
PspPI	GGNCC	3 cut(s)	151, 337, 490
PspPPI	RGGWCCY	2 cut(s)	151, 337
PsuI	RGATCY	4 cut(s)	127, 163, 273, 501
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
Rsr2I	CGGWCCG	1 cut(s)	490
RsrII	CGGWCCG	1 cut(s)	490
SatI	GCNGC	5 cut(s)	55, 312, 463, 471, 476
Sau3AI	GATC	4 cut(s)	127, 163, 273, 501
Sau96I	GGNCC	3 cut(s)	151, 337, 490
ScrFI	CCNGG	3 cut(s)	148, 149, 374
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	5 cut(s)	8, 28, 260, 295, 369
SfaNI	GCATC	2 cut(s)	118, 474
SinI	GGWCC	3 cut(s)	151, 337, 490
SmaI	CCCGGG	1 cut(s)	149
SsiI	CCGC	8 cut(s)	15, 54, 57, 309, 362, 397, 463, 476
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	3 cut(s)	146, 147, 372
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	3 cut(s)	8, 260, 369
TaqI	TCGA	1 cut(s)	318
TaqII	GACCGA	1 cut(s)	507
TauI	GCSGC	3 cut(s)	57, 465, 478
TfiI	GAWTC	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	142, 323
TseI	GCWGC	2 cut(s)	311, 470
Tsp45I	GTSAC	2 cut(s)	142, 323
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	3 cut(s)	176, 358, 439
TspMI	CCCGGG	1 cut(s)	147
VpaK11BI	GGWCC	3 cut(s)	151, 337, 490
XmaI	CCCGGG	1 cut(s)	147
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.