Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

84207997 .. 84216324

Gene Structure 8328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACGTTGTTGTGCGGTGGTGGAGGTTGTTGTGGTCAAGTCATTGGCAACGGCGGCGGGGATGAACTCGAGTGTGCGGTGAAACCTCGGAAGGTCGAAGGGCAAGGCTGTACTATTTCGAGAGACAAACTTCCTTGTGCTCGGTCTCGGCTTCTACGGCTGAGAAGAAATCATAAACAGTCCCGAGCTCAACTCCTTTGGATTTTTCAGCTTATTGACGCTATGAACAGAGAAATTGATAGGCCTCAAGATGGCTATCAAGAGCATCGTCCCATGGCTAGAGAAAGTCACCATCGACGTCATGATCCATACGATCGAAATGCTCGAGAAGGTAATCGCCCAAGTCAACAATCACGCGACCGTAGGAGCTATGATTTTGAGGGAAGAAGGGTTGGAAACCATGGAGCCAACATTGGCCATGGTCATCACTTTCGAACTCCACGGGTCTTAGGGACCATGCAAATTGCGCCAATGCGTCTCAAGGAGAATCCTCTTTATGGTGTCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.51

Weight (kDa)

10.04

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	301
AccII	CGCG	1 cut(s)	357
AciI	CCGC	4 cut(s)	15, 54, 57, 77
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	251, 497
AluBI	AGCT	3 cut(s)	188, 211, 369
AluI	AGCT	3 cut(s)	188, 211, 369
Alw21I	GWGCWC	2 cut(s)	142, 190
Alw26I	GTCTC	3 cut(s)	117, 150, 482
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	3 cut(s)	68, 183, 324
AoxI	GGCC	2 cut(s)	242, 415
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	91, 281
AsuII	TTCGAA	1 cut(s)	433
AvaI	CYCGRG	3 cut(s)	68, 183, 324
AvaII	GGWCC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	142, 190
BccI	CCATC	2 cut(s)	245, 300
BceAI	ACGGC	2 cut(s)	67, 173
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BcoDI	GTCTC	3 cut(s)	117, 150, 482
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	453
BmeT110I	CYCGRG	3 cut(s)	68, 183, 324
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	2 cut(s)	406, 454
BmsI	GCATC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	231, 464
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	5 cut(s)	86, 273, 400, 418, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 497
Bse8I	GATNNNNATC	1 cut(s)	255
BseDI	CCNNGG	5 cut(s)	86, 273, 400, 418, 440
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	251, 497
BseMII	CTCAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	357
Bsh1285I	CGRYCG	2 cut(s)	316, 361
BshFI	GGCC	2 cut(s)	244, 417
BsiEI	CGRYCG	2 cut(s)	316, 361
BsiHKAI	GWGCWC	2 cut(s)	142, 190
BsiHKCI	CYCGRG	3 cut(s)	68, 183, 324
BslFI	GGGAC	3 cut(s)	166, 255, 466
BslI	CCNNNNNNNGG	2 cut(s)	251, 497
BsmAI	GTCTC	3 cut(s)	117, 150, 482
BsmBI	CGTCTC	1 cut(s)	482
BsmFI	GGGAC	3 cut(s)	166, 255, 466
BsnI	GGCC	2 cut(s)	244, 417
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	3 cut(s)	68, 183, 324
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	142, 190
Bsp143I	GATC	2 cut(s)	304, 313
Bsp19I	CCATGG	3 cut(s)	273, 400, 418
BspACI	CCGC	4 cut(s)	15, 54, 57, 77
BspANI	GGCC	2 cut(s)	244, 417
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	406, 454
BspPI	GGATC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	150
BssECI	CCNNGG	5 cut(s)	86, 273, 400, 418, 440
BssMI	GATC	2 cut(s)	304, 313
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	3 cut(s)	273, 400, 418
Bst4CI	ACNGT	2 cut(s)	180, 362
BstACI	GRCGYC	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	161, 448
BstDSI	CCRYGG	4 cut(s)	273, 400, 418, 440
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	307, 316
BstMAI	GTCTC	3 cut(s)	117, 150, 482
BstMBI	GATC	2 cut(s)	304, 313
BstMCI	CGRYCG	2 cut(s)	316, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 157, 466
BstUI	CGCG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	244, 417
BtgI	CCRYGG	4 cut(s)	273, 400, 418, 440
BtsCI	GGATG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	453
CseI	GACGC	2 cut(s)	227, 464
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	5 cut(s)	274, 302, 401, 419, 457
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	161, 448
DpnI	GATC	2 cut(s)	306, 315
DpnII	GATC	2 cut(s)	304, 313
EaeI	YGGCCR	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	3 cut(s)	273, 400, 418
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	3 cut(s)	68, 183, 324
EcoICRI	GAGCTC	1 cut(s)	188
EcoT14I	CCWWGG	3 cut(s)	273, 400, 418
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	3 cut(s)	273, 400, 418
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	5 cut(s)	277, 305, 404, 422, 460
FaqI	GGGAC	3 cut(s)	166, 255, 466
FatI	CATG	5 cut(s)	273, 301, 400, 418, 456
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	244, 417
HgaI	GACGC	2 cut(s)	227, 464
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	5 cut(s)	277, 305, 404, 422, 460
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	1 cut(s)	487
HphI	GGTGA	2 cut(s)	91, 281
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	6 cut(s)	120, 183, 248, 260, 302, 326
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	4 cut(s)	85, 92, 323, 381
HpyCH4III	ACNGT	2 cut(s)	180, 362
HpyCH4IV	ACGT	2 cut(s)	5, 298
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 157, 466
HpyF3I	CTNAG	2 cut(s)	161, 448
HpySE526I	ACGT	2 cut(s)	5, 298
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	277, 305, 404, 422, 460
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	304, 313
LmnI	GCTCC	2 cut(s)	366, 404
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	5, 298
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	2 cut(s)	306, 315
MboI	GATC	2 cut(s)	304, 313
MboII	GAAGA	2 cut(s)	177, 396
MhlI	GDGCHC	2 cut(s)	142, 190
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	2 cut(s)	234, 462
MluNI	TGGCCA	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	17, 96, 255, 373, 501
Mox20I	TGGCCA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	417
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	54, 157, 466
NcoI	CCATGG	3 cut(s)	273, 400, 418
NdeII	GATC	2 cut(s)	304, 313
NlaIII	CATG	5 cut(s)	277, 305, 404, 422, 460
NlaIV	GGNNCC	2 cut(s)	406, 454
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	433
PaeR7I	CTCGAG	2 cut(s)	68, 324
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	56
Ple19I	CGATCG	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	406, 454
PspPI	GGNCC	1 cut(s)	453
PspXI	VCTCGAGB	1 cut(s)	68
PvuI	CGATCG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	190
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	304, 313
Sau96I	GGNCC	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	142, 190
SetI	ASST	9 cut(s)	8, 28, 88, 96, 190, 213, 301, 334, 371
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	2 cut(s)	68, 324
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	453
SlaI	CTCGAG	2 cut(s)	68, 324
SmlI	CTYRAG	4 cut(s)	68, 246, 324, 479
SmoI	CTYRAG	4 cut(s)	68, 246, 324, 479
Sse9I	AATT	2 cut(s)	234, 462
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	4 cut(s)	15, 54, 57, 77
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	190
StuI	AGGCCT	1 cut(s)	244
StyI	CCWWGG	3 cut(s)	273, 400, 418
TaaI	ACNGT	2 cut(s)	180, 362
TaiI	ACGT	2 cut(s)	8, 301
TaqI	TCGA	7 cut(s)	69, 96, 119, 295, 316, 325, 433
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	234, 462
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	78, 239
VpaK11BI	GGWCC	1 cut(s)	453
XhoI	CTCGAG	2 cut(s)	68, 324
XspI	CTAG	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.