RLG00000029863

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001193
Physical Location & Seq
Forward (+)
50318705 .. 50319170
466 bp
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UTR
Exon/CDS
Intron
RLM00000029863

Sequence Viewer

Length: 423 bp
ATGTTATTGAAGTTTGACAAGTATTGGAATTCCATTCAAGGCATGATGGCTGTTGCAACCATATTGGATCCAAGGTACAAGATGGAGTTGATTGAATACTTCTTTCCTGTGATTTATCAAGAGAGGCACTCATCGGAAGTTGAGAGAATTACAGAGTGGACAAATAACCTGACAAAGCATTATCAGTTAAGCCTGCAAGCCGATCAAGTATCATCTCAATCTTCTACTTCTCCATCTTTAATACCTTTTGATTTGAAGGGCGACTCTCTAGCATCTTTCAATTTATATGCTTCTAGTAAGAAAAAGAATGATAGCATGAAGTCTGAATTGGAGGATTACTTGGGAGAGAAGCTGATACCAAGAACCAAAACTTCCCCTAAGTTTAATATTTTGGAATGGTGGAAGGTTAATGGAATATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

141

Amino Acids

16.43

Weight (kDa)

6.74

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
hAT-like_RNase-H PF14372 1 - 61 1.3e-15 hAT-like transposase, RNase-H fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 62, 75
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 5 cut(s) 10, 38, 95, 256, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
AlwI GGATC 2 cut(s) 62, 75
ApoI RAATTY 1 cut(s) 28
BamHI GGATCC 1 cut(s) 67
BccI CCATC 3 cut(s) 40, 76, 241
BfaI CTAG 2 cut(s) 269, 294
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BsaJI CCNNGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 71
Bsp143I GATC 2 cut(s) 67, 202
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 62, 75
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 2 cut(s) 67, 202
BssT1I CCWWGG 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 194, 198
BstDEI CTNAG 1 cut(s) 378
BstKTI GATC 2 cut(s) 70, 205
BstMBI GATC 2 cut(s) 67, 202
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 194, 198
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 43, 316
CviJI RGCY 4 cut(s) 50, 192, 200, 352
CviKI_1 RGCY 4 cut(s) 50, 192, 200, 352
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 69, 204
DpnII GATC 2 cut(s) 67, 202
Eco130I CCWWGG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 2 cut(s) 46, 319
FaiI YATR 6 cut(s) 44, 62, 286, 288, 317, 418
FatI CATG 2 cut(s) 42, 315
FspBI CTAG 2 cut(s) 269, 294
Hin1II CATG 2 cut(s) 46, 319
HinfI GANTC 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 136, 325
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 250, 397
HpyCH4V TGCA 2 cut(s) 56, 196
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 2 cut(s) 46, 319
Kzo9I GATC 2 cut(s) 67, 202
LpnPI CCDG 3 cut(s) 120, 182, 206
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 269, 294
MalI GATC 2 cut(s) 69, 204
MboI GATC 2 cut(s) 67, 202
MboII GAAGA 1 cut(s) 213
MflI RGATCY 1 cut(s) 67
MluCI AATT 4 cut(s) 28, 147, 280, 326
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 2 cut(s) 117, 325
MseI TTAA 4 cut(s) 188, 239, 384, 408
NdeII GATC 2 cut(s) 67, 202
NlaIII CATG 2 cut(s) 46, 319
NlaIV GGNNCC 1 cut(s) 69
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SaqAI TTAA 4 cut(s) 188, 239, 384, 408
Sau3AI GATC 2 cut(s) 67, 202
SchI GAGTC 1 cut(s) 257
SetI ASST 5 cut(s) 77, 171, 247, 354, 408
SfaNI GCATC 1 cut(s) 281
Sse9I AATT 4 cut(s) 28, 147, 280, 326
SspI AATATT 1 cut(s) 388
SspMI CTAG 2 cut(s) 269, 294
StyI CCWWGG 1 cut(s) 71
TasI AATT 4 cut(s) 28, 147, 280, 326
Tru1I TTAA 4 cut(s) 188, 239, 384, 408
Tru9I TTAA 4 cut(s) 188, 239, 384, 408
TspDTI ATGAA 1 cut(s) 332
XapI RAATTY 1 cut(s) 28
XspI CTAG 2 cut(s) 269, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.