Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000840.1

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

94894 .. 95475

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000840.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggaagatatgtcatatagctgtgctaataatgaaataatggatgaggatgtagagcaaagggttccacgcaaaagaaagaggaaagcaacagtatgggataattttgaagtagaagtgatcaagggggaagagaaagcaatttgtaagcattgcggcaagatcctaagtgcaaagtcttcaaatggaactaattccttgaatttacatgttaaatcatgtaaaggactaaagccccaatcaacaaggagcgaggggacaatcatatttggtcattttgatgagagtaatgcaaagactgagcttgccaatatgatcatcttgcatgagtaccaattatcgatggttgagcatctcgggttcaggaggtattctaatgcattacaaccttcctttagggttccatgtagaaacacaatcaagaaggagattatgaagatctatgaattcgagaaagaaaagacaatgaagcttatacatatgaatagaagtagaattgcaatcactacagacatgtggactgcaagtaatcaaaagaaaggatttatggccataacatcgcattttattgatgattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

193

Amino Acids

22.3

Weight (kDa)

9.04

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	202, 446
AfaI	GTAC	1 cut(s)	332
AflIII	ACRYGT	2 cut(s)	208, 513
AgsI	TTSAA	3 cut(s)	110, 183, 202
AluBI	AGCT	3 cut(s)	21, 304, 472
AluI	AGCT	3 cut(s)	21, 304, 472
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	549
ApoI	RAATTY	2 cut(s)	202, 446
Asp700I	GAANNNNTTC	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	171
BccI	CCATC	1 cut(s)	337
BclI	TGATCA	2 cut(s)	120, 315
BfmI	CTRYAG	1 cut(s)	507
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	356
BmiI	GGNNCC	2 cut(s)	66, 402
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	341
BseGI	GGATG	2 cut(s)	49, 55
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	551
BshVI	ATCGAT	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	120, 162, 315, 438
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	66, 402
BspPI	GGATC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	151
BssMI	GATC	4 cut(s)	120, 162, 315, 438
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	167, 300, 579
BstF5I	GGATG	2 cut(s)	49, 55
BstKTI	GATC	4 cut(s)	123, 165, 318, 441
BstMBI	GATC	4 cut(s)	120, 162, 315, 438
BstNSI	RCATGY	2 cut(s)	212, 517
BstSFI	CTRYAG	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	162, 438
BstYI	RGATCY	2 cut(s)	162, 438
Bsu15I	ATCGAT	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	49, 55
Cac8I	GCNNGC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	5 cut(s)	209, 219, 326, 405, 514
CviJI	RGCY	5 cut(s)	21, 235, 304, 472, 551
CviKI_1	RGCY	5 cut(s)	21, 235, 304, 472, 551
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	167, 300, 579
DpnI	GATC	4 cut(s)	122, 164, 317, 440
DpnII	GATC	4 cut(s)	120, 162, 315, 438
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	5 cut(s)	212, 222, 329, 408, 517
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	5 cut(s)	208, 218, 325, 404, 513
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	2 cut(s)	120, 315
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	56, 62
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	551
Hin1II	CATG	5 cut(s)	212, 222, 329, 408, 517
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188III	TCNNGA	3 cut(s)	364, 421, 451
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	399, 418
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	173, 293, 325, 380, 500, 524
HpyF3I	CTNAG	3 cut(s)	167, 300, 579
Hsp92II	CATG	5 cut(s)	212, 222, 329, 408, 517
Ksp22I	TGATCA	2 cut(s)	120, 315
Kzo9I	GATC	4 cut(s)	120, 162, 315, 438
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	1 cut(s)	349
LweI	GCATC	1 cut(s)	361
MalI	GATC	4 cut(s)	122, 164, 317, 440
MboI	GATC	4 cut(s)	120, 162, 315, 438
MboII	GAAGA	4 cut(s)	17, 143, 171, 448
MflI	RGATCY	2 cut(s)	162, 438
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	7 cut(s)	103, 141, 193, 202, 335, 446, 495
MluNI	TGGCCA	1 cut(s)	551
MnlI	CCTC	4 cut(s)	40, 75, 247, 360
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	551
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	4 cut(s)	120, 162, 315, 438
NlaIII	CATG	5 cut(s)	212, 222, 329, 408, 517
NlaIV	GGNNCC	2 cut(s)	66, 402
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	212, 517
PciI	ACATGT	2 cut(s)	208, 513
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	1 cut(s)	158
PscI	ACATGT	2 cut(s)	208, 513
PspN4I	GGNNCC	2 cut(s)	66, 402
PsuI	RGATCY	2 cut(s)	162, 438
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	4 cut(s)	120, 162, 315, 438
SetI	ASST	5 cut(s)	23, 306, 371, 391, 474
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	7 cut(s)	103, 141, 193, 202, 335, 446, 495
SsiI	CCGC	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	341, 450
TasI	AATT	7 cut(s)	103, 141, 193, 202, 335, 446, 495
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspDTI	ATGAA	5 cut(s)	48, 449, 459, 482, 497
XapI	RAATTY	2 cut(s)	202, 446
XceI	RCATGY	2 cut(s)	212, 517
XmnI	GAANNNNTTC	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.