Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

19384606 .. 19385825

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15594.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTAGAGCTCGATTGTAAAACTAGGTGGAACTCGACATATACCATGCTTAACACTGCTATGATCTATAAGGATGTTTTTCCTCGCTTGAAACATCGAGAGCCCTTGTACAAAGATGTGCCCACTGAAGATGATTGGTCAAAAACAAAAGAACTTGTGGAGAAACTGAAGATGTTTCATGATACGACCGAACTATTTTCAGGTACCAAGTATCCCACAGCGAATCTTTACTTTAAAAATATTTGTGCTATTAGGTTAGCAATTTATGATTGGCATGGGTCTGAAAATTATGAAGTTCGAGAAATGGCAACAAAGATGCTCCAAAAGTTTGAAAAATATTGGGACACTATGCATGGTTTGATGGGAATTGCGAGCATTTTGGATCCAAGGTATAAGATGAAACAAATTGAGTTTTTGTGTCCTTTACTATATCCAGGCAGTGAAGCAACTGCAACAGCTGAGATTGAGAAGTACAAAAGATTACTTTATGACTTAGTGAAAGAATATCAGTCCAGATCTCCTCAAAGTAATGGAGCATCACAAGCTCCAAATCCTTCTTCATCTAGAGTGTCCGTGCTTAAACTTGATTTGGTGAAACAACTAGATGTGTTTGTTTCTCATTCTGCTGTGAGCACACATGTTAAATCTGAGTTGGATCATTATCTAGAGGAGTCTCTCTTGCCTATAAATGATTATACTAATTTTGATATATTGTGTTGGTGGAACTCGAATGGGATTAAATATCCCACTTTGCAAGAAATTGCAAGAGATATTTTGGCTATTCCTGTATCAACTGTTGCTTCGGAATCTTGCTTTAGTACTAGCGGAAGAGTTATAAGCTCTCATAGGAGCCGACTTCATGCAAAGACAATAGAGGCACTGATGTGTGCTCGAGATTGGTTATGGAGTGAGATAAGAGTTTCAAACCCTGAAGACTCTAAAATAACCACAGTTCAAGATGATGTTGAATGCAATGTTTCGGATGAGGATCCATCCAAGGAAGAAGAGAACGTCACCTTGCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

343

Amino Acids

39.53

Weight (kDa)

5.41

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	67 - 169	6.7e-28	hAT-like transposase, RNase-H fold
Dimer_Tnp_hAT	PF05699	217 - 301	4.3e-31	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	1 cut(s)	825
AclWI	GGATC	5 cut(s)	377, 390, 663, 983, 996
AcuI	CTGAAG	3 cut(s)	147, 188, 951
AfaI	GTAC	4 cut(s)	110, 205, 473, 820
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	5 cut(s)	91, 332, 924, 956, 968
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AleI	CACNNNNGTG	1 cut(s)	883
AluBI	AGCT	4 cut(s)	10, 458, 545, 840
AluI	AGCT	4 cut(s)	10, 458, 545, 840
Alw21I	GWGCWC	3 cut(s)	12, 635, 892
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	5 cut(s)	377, 390, 663, 983, 996
Ama87I	CYCGRG	1 cut(s)	891
Asp718I	GGTACC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	604, 1006
AvaI	CYCGRG	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	123
BamHI	GGATCC	2 cut(s)	382, 988
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	2 cut(s)	12, 105
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	3 cut(s)	12, 635, 892
BccI	CCATC	2 cut(s)	355, 1000
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	5 cut(s)	24, 564, 602, 665, 822
BfuI	GTATCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	515
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	891
BmiI	GGNNCC	4 cut(s)	205, 384, 851, 990
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	306, 545
BpiI	GAAGAC	1 cut(s)	939
BsaBI	GATNNNNATC	2 cut(s)	660, 987
BsaJI	CCNNGG	2 cut(s)	386, 996
Bse3DI	GCAATG	1 cut(s)	979
Bse8I	GATNNNNATC	2 cut(s)	660, 987
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	386, 996
BseGI	GGATG	3 cut(s)	79, 988, 992
BseJI	GATNNNNATC	2 cut(s)	660, 987
BseMI	GCAATG	1 cut(s)	979
BseMII	CTCAG	2 cut(s)	450, 639
BseRI	GAGGAG	2 cut(s)	510, 683
BseSI	GKGCMC	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	3 cut(s)	12, 635, 892
BsiHKCI	CYCGRG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	974
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	5 cut(s)	12, 105, 123, 635, 892
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	5 cut(s)	63, 382, 515, 655, 988
BspACI	CCGC	1 cut(s)	825
BspCNI	CTCAG	2 cut(s)	451, 640
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	4 cut(s)	205, 384, 851, 990
BspPI	GGATC	5 cut(s)	377, 390, 663, 983, 996
BspT107I	GGYRCC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	979
BsrGI	TGTACA	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	386, 996
BssMI	GATC	5 cut(s)	63, 382, 515, 655, 988
BssT1I	CCWWGG	2 cut(s)	386, 996
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	796, 952
Bst6I	CTCTTC	2 cut(s)	823, 999
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	459, 493, 648
BstF5I	GGATG	3 cut(s)	79, 988, 992
BstKTI	GATC	5 cut(s)	66, 385, 518, 658, 991
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	5 cut(s)	63, 382, 515, 655, 988
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	3 cut(s)	382, 515, 988
BstYI	RGATCY	3 cut(s)	382, 515, 988
BsuI	GTATCC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	79, 988, 992
BtsI	GCAGTG	2 cut(s)	54, 445
BtsIMutI	CAGTG	4 cut(s)	54, 123, 445, 878
Cac8I	GCNNGC	1 cut(s)	373
CciI	TCATGA	1 cut(s)	178
Csp6I	GTAC	4 cut(s)	109, 204, 472, 819
CviAII	CATG	6 cut(s)	46, 179, 275, 353, 638, 860
CviJI	RGCY	7 cut(s)	10, 103, 458, 545, 779, 840, 852
CviKI_1	RGCY	7 cut(s)	10, 103, 458, 545, 779, 840, 852
CviQI	GTAC	4 cut(s)	109, 204, 472, 819
DdeI	CTNAG	3 cut(s)	459, 493, 648
DpnI	GATC	5 cut(s)	65, 384, 517, 657, 990
DpnII	GATC	5 cut(s)	63, 382, 515, 655, 988
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	823, 999
EarI	CTCTTC	2 cut(s)	823, 999
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	386, 996
Eco24I	GRGCYC	2 cut(s)	12, 105
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	3 cut(s)	147, 188, 951
Eco88I	CYCGRG	1 cut(s)	891
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	386, 996
EcoT22I	ATGCAT	1 cut(s)	354
EcoT38I	GRGCYC	2 cut(s)	12, 105
ErhI	CCWWGG	2 cut(s)	386, 996
FaeI	CATG	6 cut(s)	49, 182, 278, 356, 641, 863
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	6 cut(s)	45, 178, 274, 352, 637, 859
FokI	GGATG	3 cut(s)	86, 979, 995
FriOI	GRGCYC	2 cut(s)	12, 105
FspBI	CTAG	5 cut(s)	24, 564, 602, 665, 822
Hin1II	CATG	6 cut(s)	49, 182, 278, 356, 641, 863
HinfI	GANTC	4 cut(s)	223, 671, 806, 935
HphI	GGTGA	2 cut(s)	604, 1006
Hpy188I	TCNGA	4 cut(s)	283, 649, 805, 982
Hpy188III	TCNNGA	8 cut(s)	98, 179, 299, 513, 564, 665, 893, 956
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	2 cut(s)	796, 952
HpyCH4IV	ACGT	1 cut(s)	1011
HpyCH4V	TGCA	6 cut(s)	352, 452, 754, 764, 863, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	3 cut(s)	459, 493, 648
HpySE526I	ACGT	1 cut(s)	1011
Hsp92II	CATG	6 cut(s)	49, 182, 278, 356, 641, 863
KpnI	GGTACC	1 cut(s)	207
Kzo9I	GATC	5 cut(s)	63, 382, 515, 655, 988
LmnI	GCTCC	4 cut(s)	324, 533, 550, 849
LpnPI	CCDG	6 cut(s)	186, 420, 447, 526, 798, 942
LweI	GCATC	2 cut(s)	306, 545
MaeI	CTAG	5 cut(s)	24, 564, 602, 665, 822
MaeII	ACGT	1 cut(s)	1011
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	5 cut(s)	65, 384, 517, 657, 990
MboI	GATC	5 cut(s)	63, 382, 515, 655, 988
MboII	GAAGA	7 cut(s)	140, 181, 549, 840, 944, 1013, 1016
MflI	RGATCY	3 cut(s)	382, 515, 988
MhlI	GDGCHC	5 cut(s)	12, 105, 123, 635, 892
MluCI	AATT	6 cut(s)	261, 286, 366, 405, 700, 759
MlyI	GAGTC	2 cut(s)	680, 929
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	5 cut(s)	93, 531, 661, 868, 979
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	5 cut(s)	51, 234, 579, 642, 738
MslI	CAYNNNNRTG	2 cut(s)	59, 883
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeII	GATC	5 cut(s)	63, 382, 515, 655, 988
NlaIII	CATG	6 cut(s)	49, 182, 278, 356, 641, 863
NlaIV	GGNNCC	4 cut(s)	205, 384, 851, 990
NmuCI	GTSAC	1 cut(s)	1012
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	1 cut(s)	641
OliI	CACNNNNGTG	1 cut(s)	883
PaeR7I	CTCGAG	1 cut(s)	891
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	974
PfeI	GAWTC	2 cut(s)	223, 806
PleI	GAGTC	2 cut(s)	679, 929
PpsI	GAGTC	2 cut(s)	679, 929
PscI	ACATGT	1 cut(s)	637
PsiI	TTATAA	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	205, 384, 851, 990
PsuI	RGATCY	3 cut(s)	382, 515, 988
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	4 cut(s)	110, 205, 473, 820
RsaNI	GTAC	4 cut(s)	109, 204, 472, 819
RseI	CAYNNNNRTG	2 cut(s)	59, 883
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	51, 234, 579, 642, 738
Sau3AI	GATC	5 cut(s)	63, 382, 515, 655, 988
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	2 cut(s)	680, 929
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	5 cut(s)	12, 105, 123, 635, 892
SfaNI	GCATC	2 cut(s)	306, 545
Sfr274I	CTCGAG	1 cut(s)	891
SlaI	CTCGAG	1 cut(s)	891
SmiMI	CAYNNNNRTG	2 cut(s)	59, 883
SmlI	CTYRAG	2 cut(s)	891, 1022
SmoI	CTYRAG	2 cut(s)	891, 1022
Sse9I	AATT	6 cut(s)	261, 286, 366, 405, 700, 759
SsiI	CCGC	1 cut(s)	825
SspI	AATATT	2 cut(s)	241, 338
SspMI	CTAG	5 cut(s)	24, 564, 602, 665, 822
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	386, 996
TaaI	ACNGT	2 cut(s)	796, 952
TaiI	ACGT	1 cut(s)	1014
TaqI	TCGA	6 cut(s)	12, 35, 97, 298, 728, 892
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	6 cut(s)	261, 286, 366, 405, 700, 759
TatI	WGTACW	3 cut(s)	108, 471, 818
TfiI	GAWTC	2 cut(s)	223, 806
Tru1I	TTAA	5 cut(s)	51, 234, 579, 642, 738
Tru9I	TTAA	5 cut(s)	51, 234, 579, 642, 738
TscAI	CASTG	4 cut(s)	61, 130, 445, 885
TseFI	GTSAC	1 cut(s)	1012
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	5 cut(s)	167, 306, 413, 549, 848
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	4 cut(s)	61, 130, 445, 885
XbaI	TCTAGA	2 cut(s)	563, 664
XceI	RCATGY	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	891
XspI	CTAG	5 cut(s)	24, 564, 602, 665, 822
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.