FvH4_3g33584

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001193
Physical Location & Seq
Reverse (-)
29120499 .. 29121771
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33584.t1

Sequence Viewer

Length: 660 bp
ATGGGTCTAATGAACTGGGTACGGGTAATACCCGTGGGTACCCAGATAACACCCACAGACCCAAAATCTCTCTTCTCAGTTCTCACTTGCGTTCTCTGGTTCCCAAACTCGTCTTCTCCGAGTCTCCGATCCAAGCTCAGTCTCATACCCAACCGATCCAAGGCCAGTATGGAAGAGTATAGCTTTGCTGATAATGAAAACATGAATGAGGATGTGGAACAAAGTTTTCCACGCAAAAGAAAGAGAAAAGCACCAGTATGGGATAATTTTGAAGTAACATTGATCAGTGGGGAAGATAAAGCAATTTGCAAGCATTGCGGCAAGATCCTAAGTGCAAAGGCTTCACATGGAACTAATTCCTTAAATACACATGTTAAATCATGTAAAGGACTACAATCCCAATCAATAAGGAGTGAGGGGAGTCAAGGGACAGTAAGAATGGGACAGTTTGACAAGACTCATGAGACTAATGCAAAGACTGAGCTTGCGAATATGATCATCATGCATGAGTATCCATTGTCGATGGTTGAGCATCTCGGGTTCAAGAGGTATTCTAAAGCATTACAACCTTCCTTTAAGGTTCCATGTAGAAACACAATCAAGAAGGAGATTATGAAGATCTTTGAATTCGAGAAAGAAAAGACAATGAAGCTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

220

Amino Acids

24.87

Weight (kDa)

9.49

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 97 - 128 2.7e-06 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 1 cut(s) 318
AclWI GGATC 3 cut(s) 123, 150, 319
AcsI RAATTY 1 cut(s) 626
AfaI GTAC 2 cut(s) 21, 40
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 3 cut(s) 272, 544, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 4 cut(s) 136, 183, 484, 652
AluI AGCT 4 cut(s) 136, 183, 484, 652
Alw26I GTCTC 3 cut(s) 128, 146, 458
AlwI GGATC 3 cut(s) 123, 150, 319
Ama87I CYCGRG 1 cut(s) 536
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 536
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 1 cut(s) 517
BciVI GTATCC 1 cut(s) 522
BclI TGATCA 2 cut(s) 282, 495
BcoDI GTCTC 3 cut(s) 128, 146, 458
BfuI GTATCC 1 cut(s) 522
BglII AGATCT 1 cut(s) 618
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 536
BmiI GGNNCC 3 cut(s) 40, 101, 582
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 33, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 3 cut(s) 20, 165, 254
Bse3DI GCAATG 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 33, 159
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 90, 151, 471
BseNI ACTGG 3 cut(s) 20, 165, 254
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 442, 456
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 3 cut(s) 128, 146, 458
BsmFI GGGAC 2 cut(s) 442, 456
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 536
Bsp143I GATC 6 cut(s) 128, 155, 282, 324, 495, 618
BspACI CCGC 1 cut(s) 318
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 89, 150, 472
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 40, 101, 582
BspPI GGATC 3 cut(s) 123, 150, 319
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 3 cut(s) 20, 165, 254
BssECI CCNNGG 2 cut(s) 33, 159
BssMI GATC 6 cut(s) 128, 155, 282, 324, 495, 618
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 433, 447
Bst6I CTCTTC 2 cut(s) 77, 168
BstAPI GCANNNNNTGC 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 311, 486
BstDEI CTNAG 4 cut(s) 76, 137, 329, 480
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 6 cut(s) 131, 158, 285, 327, 498, 621
BstMAI GTCTC 3 cut(s) 128, 146, 458
BstMBI GATC 6 cut(s) 128, 155, 282, 324, 495, 618
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 324, 618
BstYI RGATCY 2 cut(s) 324, 618
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 311, 486
CciI TCATGA 1 cut(s) 460
Csp6I GTAC 2 cut(s) 20, 39
CviAII CATG 8 cut(s) 202, 347, 371, 381, 461, 502, 506, 585
CviJI RGCY 6 cut(s) 136, 164, 183, 341, 484, 652
CviKI_1 RGCY 6 cut(s) 136, 164, 183, 341, 484, 652
CviQI GTAC 2 cut(s) 20, 39
DdeI CTNAG 4 cut(s) 76, 137, 329, 480
DpnI GATC 6 cut(s) 130, 157, 284, 326, 497, 620
DpnII GATC 6 cut(s) 128, 155, 282, 324, 495, 618
Eam1104I CTCTTC 2 cut(s) 77, 168
EarI CTCTTC 2 cut(s) 77, 168
Eco130I CCWWGG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 8 cut(s) 205, 350, 374, 384, 464, 505, 509, 588
FaqI GGGAC 2 cut(s) 442, 456
FatI CATG 8 cut(s) 201, 346, 370, 380, 460, 501, 505, 584
FbaI TGATCA 2 cut(s) 282, 495
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 319
GluI GCNGC 1 cut(s) 319
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 8 cut(s) 205, 350, 374, 384, 464, 505, 509, 588
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 3 cut(s) 121, 421, 457
Hpy188I TCNGA 2 cut(s) 120, 128
Hpy188III TCNNGA 4 cut(s) 461, 544, 601, 631
HpyAV CCTTC 2 cut(s) 579, 598
HpyCH4III ACNGT 2 cut(s) 433, 447
HpyCH4V TGCA 4 cut(s) 309, 335, 473, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 4 cut(s) 76, 137, 329, 480
Hsp92II CATG 8 cut(s) 205, 350, 374, 384, 464, 505, 509, 588
KpnI GGTACC 1 cut(s) 42
Ksp22I TGATCA 2 cut(s) 282, 495
Kzo9I GATC 6 cut(s) 128, 155, 282, 324, 495, 618
LpnPI CCDG 4 cut(s) 56, 82, 178, 267
LweI GCATC 1 cut(s) 541
MaeIII GTNAC 1 cut(s) 274
MalI GATC 6 cut(s) 130, 157, 284, 326, 497, 620
MboI GATC 6 cut(s) 128, 155, 282, 324, 495, 618
MboII GAAGA 5 cut(s) 64, 105, 185, 305, 628
MflI RGATCY 2 cut(s) 324, 618
MluCI AATT 4 cut(s) 265, 303, 355, 626
MlyI GAGTC 3 cut(s) 130, 430, 451
MnlI CCTC 3 cut(s) 202, 409, 540
Mph1103I ATGCAT 1 cut(s) 507
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 3 cut(s) 362, 375, 576
MslI CAYNNNNRTG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 6 cut(s) 128, 155, 282, 324, 495, 618
NlaIII CATG 8 cut(s) 205, 350, 374, 384, 464, 505, 509, 588
NlaIV GGNNCC 3 cut(s) 40, 101, 582
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 374
PagI TCATGA 1 cut(s) 460
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 320
PleI GAGTC 3 cut(s) 129, 429, 451
PpsI GAGTC 3 cut(s) 129, 429, 451
PscI ACATGT 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 40, 101, 582
PsuI RGATCY 2 cut(s) 324, 618
RsaI GTAC 2 cut(s) 21, 40
RsaNI GTAC 2 cut(s) 20, 39
RseI CAYNNNNRTG 1 cut(s) 256
SaqAI TTAA 3 cut(s) 362, 375, 576
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 6 cut(s) 128, 155, 282, 324, 495, 618
SchI GAGTC 3 cut(s) 130, 430, 451
SetI ASST 7 cut(s) 138, 185, 486, 551, 571, 582, 654
SfaNI GCATC 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 256
Sse9I AATT 4 cut(s) 265, 303, 355, 626
SsiI CCGC 1 cut(s) 318
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 433, 447
TaqI TCGA 2 cut(s) 521, 630
TasI AATT 4 cut(s) 265, 303, 355, 626
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 3 cut(s) 362, 375, 576
Tru9I TTAA 3 cut(s) 362, 375, 576
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 26, 210, 218, 629
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.