Rw3G028600

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001193
Physical Location & Seq
Reverse (-)
42861369 .. 42861899
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028600.1

Sequence Viewer

Length: 531 bp
ATGTCATATAGCTGTGCTAATAATGAAATAATGGATGAGGATGTGGAACAAAGGGTTCCACGCAAAAGAAAGAGGAAAGCAGCAGTATGGGATAATTTTGAAGTAAAAGTGATCAAGGGGGAAGAGAAAGCAATTTGTAAGCATTGTGGCAAGATCCCAAGTGCAAAGTCTTCAAATGGAACTAATTCCTTGAATTTATATGTTAAATCATGTAAAGGACTAAAGCCCCAATCAACAAGGAGCGAGGGGACAATCATATTTGGTCATTTTGATGAGAGTAATGCAAAGATTGAGCTTGCCAATATGATCATCTTGCATGAGTACCAATTATTGATGGTTGAGCATCTTGAGTTCAGGAGGTATTCTAATGCATTACAACCTTCCTTTAGGGTTCCATGTAGAAACACAATCAAGAAGGAGATTATGAAGATCTATGAATTCGAGAAAGAAAAGACAATGAAGCTTATACATATGAATAGAAGTAGAATTGCAATCACTACAGACATGTGGACTGCAAGTAATCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

176

Amino Acids

20.45

Weight (kDa)

9.36

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 2 cut(s) 193, 437
AfaI GTAC 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 3 cut(s) 101, 174, 193
AluBI AGCT 3 cut(s) 12, 295, 463
AluI AGCT 3 cut(s) 12, 295, 463
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 193, 437
Asp700I GAANNNNTTC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 328
BclI TGATCA 2 cut(s) 111, 306
BfmI CTRYAG 1 cut(s) 498
BglII AGATCT 1 cut(s) 429
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 57, 393
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 368
BseGI GGATG 2 cut(s) 40, 46
BseXI GCAGC 1 cut(s) 92
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
Bsp143I GATC 4 cut(s) 111, 153, 306, 429
BspLI GGNNCC 2 cut(s) 57, 393
BspPI GGATC 1 cut(s) 148
BssMI GATC 4 cut(s) 111, 153, 306, 429
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 297
BstF5I GGATG 2 cut(s) 40, 46
BstKTI GATC 4 cut(s) 114, 156, 309, 432
BstMBI GATC 4 cut(s) 111, 153, 306, 429
BstNSI RCATGY 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 153, 429
BstYI RGATCY 2 cut(s) 153, 429
BtsCI GGATG 2 cut(s) 40, 46
Cac8I GCNNGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 322
CviAII CATG 4 cut(s) 210, 317, 396, 505
CviJI RGCY 4 cut(s) 12, 226, 295, 463
CviKI_1 RGCY 4 cut(s) 12, 226, 295, 463
CviQI GTAC 1 cut(s) 322
DpnI GATC 4 cut(s) 113, 155, 308, 431
DpnII GATC 4 cut(s) 111, 153, 306, 429
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 437
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 4 cut(s) 213, 320, 399, 508
FaqI GGGAC 1 cut(s) 262
FatI CATG 4 cut(s) 209, 316, 395, 504
FauNDI CATATG 1 cut(s) 471
FbaI TGATCA 2 cut(s) 111, 306
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 2 cut(s) 47, 53
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
Hin1II CATG 4 cut(s) 213, 320, 399, 508
HindIII AAGCTT 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 510
Hpy188III TCNNGA 4 cut(s) 347, 355, 412, 442
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 2 cut(s) 390, 409
HpyCH4V TGCA 6 cut(s) 164, 284, 316, 371, 491, 515
Hsp92II CATG 4 cut(s) 213, 320, 399, 508
Ksp22I TGATCA 2 cut(s) 111, 306
Kzo9I GATC 4 cut(s) 111, 153, 306, 429
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 352
MalI GATC 4 cut(s) 113, 155, 308, 431
MboI GATC 4 cut(s) 111, 153, 306, 429
MboII GAAGA 3 cut(s) 134, 162, 439
MflI RGATCY 2 cut(s) 153, 429
MluCI AATT 8 cut(s) 94, 132, 184, 193, 326, 437, 486, 526
MnlI CCTC 4 cut(s) 31, 66, 238, 351
Mph1103I ATGCAT 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 2 cut(s) 204, 529
MslI CAYNNNNRTG 1 cut(s) 270
NdeI CATATG 1 cut(s) 471
NdeII GATC 4 cut(s) 111, 153, 306, 429
NlaIII CATG 4 cut(s) 213, 320, 399, 508
NlaIV GGNNCC 2 cut(s) 57, 393
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 508
PciI ACATGT 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 82
PscI ACATGT 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 57, 393
PsuI RGATCY 2 cut(s) 153, 429
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 204, 529
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 4 cut(s) 111, 153, 306, 429
SetI ASST 5 cut(s) 14, 297, 362, 382, 465
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 8 cut(s) 94, 132, 184, 193, 326, 437, 486, 526
TaqI TCGA 1 cut(s) 441
TasI AATT 8 cut(s) 94, 132, 184, 193, 326, 437, 486, 526
Tru1I TTAA 2 cut(s) 204, 529
Tru9I TTAA 2 cut(s) 204, 529
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 39, 440, 450, 473, 488
XapI RAATTY 2 cut(s) 193, 437
XceI RCATGY 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.