Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

20576321 .. 20577668

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28482.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTATAAATCACCTATGGGTTTGACGTCTCCATGTGTAAACTCTGCTGGTAATGAAATCATCAATGAGGATGTGGAACAAAGTGTTCCACGCAAAAGAAAGAGGAAAGCACCAGTATGGGATAATTTTGAAGTAACATTGATCAGTGGGGAAGATAAAGCAATTTGCAAGCATTGCAGCAAGATCTTAAGTGCAAAGGCTTTGCATGGAACTAATTCATTGAATACACATGTTAAATCATGTAAAGGACTACAATCCCAATCAACAAGAAGTGAGGGGAGTCAGAGGACAGTAAGAATGGGACAGTTTGACAAGACTCATGAGACTAATGCAAAGACTGAGCTTGCGAATATGATCATCATGCATGAGTATCCATTGTCGATGGTTGAGCATCTCGGGTTCAAGAGGTATTCTAAAGCATTACAACCTTCCTTTAAGATTCCATGTAGAAACACAATCAAGAAAGAGATTATGAAGATATGTGAATTCGAGAAAGAAAAGACAATGAAGCTTATACAGATGAATACAAGTAGGATTGCAATTACTACGGACATGTGGACTGCAAGTAATCAAAAGAAGGGATTTATGGCCATAACATCACATTTTATTGATGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

207

Amino Acids

23.36

Weight (kDa)

9.44

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	187
AflIII	ACRYGT	2 cut(s)	229, 552
AgsI	TTSAA	3 cut(s)	131, 223, 403
AluBI	AGCT	2 cut(s)	343, 511
AluI	AGCT	2 cut(s)	343, 511
Alw26I	GTCTC	2 cut(s)	33, 317
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	376
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	2 cut(s)	141, 354
BcoDI	GTCTC	2 cut(s)	33, 317
BfrI	CTTAAG	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	381
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	590
BsiHKCI	CYCGRG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	33, 317
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	141, 183, 354
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	141, 183, 354
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	292, 306
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	170, 345
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	3 cut(s)	144, 186, 357
BstMAI	GTCTC	2 cut(s)	33, 317
BstMBI	GATC	3 cut(s)	141, 183, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNSI	RCATGY	2 cut(s)	233, 556
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	170, 345
CciI	TCATGA	1 cut(s)	319
CviAII	CATG	9 cut(s)	33, 206, 230, 240, 320, 361, 365, 444, 553
CviJI	RGCY	4 cut(s)	200, 343, 511, 590
CviKI_1	RGCY	4 cut(s)	200, 343, 511, 590
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	143, 185, 356
DpnII	GATC	3 cut(s)	141, 183, 354
EaeI	YGGCCR	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	9 cut(s)	36, 209, 233, 243, 323, 364, 368, 447, 556
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	9 cut(s)	32, 205, 229, 239, 319, 360, 364, 443, 552
FbaI	TGATCA	2 cut(s)	141, 354
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	9 cut(s)	36, 209, 233, 243, 323, 364, 368, 447, 556
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	280, 316, 439, 614
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	2 cut(s)	40, 558
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	5 cut(s)	320, 403, 460, 490, 618
Hpy8I	GTNNAC	2 cut(s)	40, 558
HpyAV	CCTTC	2 cut(s)	438, 571
HpyCH4III	ACNGT	2 cut(s)	292, 306
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	8 cut(s)	168, 177, 194, 205, 332, 364, 539, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	9 cut(s)	36, 209, 233, 243, 323, 364, 368, 447, 556
Ksp22I	TGATCA	2 cut(s)	141, 354
Kzo9I	GATC	3 cut(s)	141, 183, 354
LpnPI	CCDG	2 cut(s)	33, 126
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	143, 185, 356
MboI	GATC	3 cut(s)	141, 183, 354
MboII	GAAGA	2 cut(s)	164, 487
MflI	RGATCY	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	5 cut(s)	124, 162, 214, 485, 540
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	2 cut(s)	289, 310
MnlI	CCTC	5 cut(s)	61, 96, 268, 279, 399
Mox20I	TGGCCA	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	3 cut(s)	188, 234, 435
MslI	CAYNNNNRTG	1 cut(s)	115
Msp20I	TGGCCA	1 cut(s)	590
MspCI	CTTAAG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	3 cut(s)	141, 183, 354
NlaIII	CATG	9 cut(s)	36, 209, 233, 243, 323, 364, 368, 447, 556
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	2 cut(s)	233, 556
PagI	TCATGA	1 cut(s)	319
PciI	ACATGT	2 cut(s)	229, 552
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	439, 614
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	288, 310
PpsI	GAGTC	2 cut(s)	288, 310
PscI	ACATGT	2 cut(s)	229, 552
PsuI	RGATCY	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	188, 234, 435
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	3 cut(s)	141, 183, 354
SchI	GAGTC	2 cut(s)	289, 310
SetI	ASST	6 cut(s)	16, 29, 345, 410, 430, 513
SfaNI	GCATC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	5 cut(s)	124, 162, 214, 485, 540
TaaI	ACNGT	2 cut(s)	292, 306
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	380, 489
TasI	AATT	5 cut(s)	124, 162, 214, 485, 540
TfiI	GAWTC	2 cut(s)	439, 614
Tru1I	TTAA	3 cut(s)	188, 234, 435
Tru9I	TTAA	3 cut(s)	188, 234, 435
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	5 cut(s)	69, 207, 488, 521, 536
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	151
Vha464I	CTTAAG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	2 cut(s)	233, 556
XmnI	GAANNNNTTC	1 cut(s)	214
ZraI	GACGTC	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.