Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

6173343 .. 6173924

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCTCTTCACAATCAACCACCACTAATGGTGATGCTGGAACGATGGAGAATCAATCGCCTCCAATTCCTATCACATCAACAGAGAATTCGACCATTGCTGCACCACCAACTGAGAACCAGGAGAACTCAACACCAACAGGTACGAATGAGTTGACTAATGTAAACCGCCCAGGGTTTATGAGAGCACCAAAGTCGGTTGTATGGGATCATTTTGAAAAACAGGTAATTGGTGGTAAAAGAAAAGCTGTGTGCGACCATTGTAAGAAGCAATTGATTTCTGAAAAGAATAGTGGAACTACACACTTACATGATCATATTAAGTCTTGTCTTTACAAGAAACAAAGAACCATAGATCTGTCAATGTTACATCCTACAAAATCTAGTGATGGGTCTACTAAACTGGGCACTTATAGCTTTAACCCAGACAATGCCAGGAAGGAACTTGGACATATGATAATTCTTCATGAGTATCCGTTGTCAATTGTGGATCATGTTGGATTCAGAAGGTATTCTTTTGAACTGCAACCGTACGTTGTTCCTAGTTCCTACTCGAAACACAATCAAGAAAGATATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

193

Amino Acids

21.62

Weight (kDa)

8.71

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	2 cut(s)	216, 498
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	2 cut(s)	145, 533
AgsI	TTSAA	2 cut(s)	218, 521
AjnI	CCWGG	3 cut(s)	120, 172, 434
AluBI	AGCT	2 cut(s)	248, 417
AluI	AGCT	2 cut(s)	248, 417
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	216, 498
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	40, 383
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	3 cut(s)	122, 174, 436
BciVI	GTATCC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	2 cut(s)	384, 543
BfuI	GTATCC	1 cut(s)	483
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	122, 174, 436
BmrFI	CCNGG	3 cut(s)	122, 174, 436
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	172, 173
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	122, 174, 436
BseDI	CCNNGG	2 cut(s)	172, 173
BseGI	GGATG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	190
BsiWI	CGTACG	1 cut(s)	531
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	190, 410
Bsp143I	GATC	4 cut(s)	208, 313, 355, 490
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	466
BspPI	GGATC	2 cut(s)	216, 498
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	172, 173
BssMI	GATC	4 cut(s)	208, 313, 355, 490
Bst2UI	CCWGG	3 cut(s)	122, 174, 436
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	4 cut(s)	211, 316, 358, 493
BstMBI	GATC	4 cut(s)	208, 313, 355, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	3 cut(s)	122, 174, 436
BstSCI	CCNGG	3 cut(s)	120, 172, 434
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	144, 532
CviAII	CATG	3 cut(s)	311, 467, 494
CviJI	RGCY	3 cut(s)	5, 248, 417
CviKI_1	RGCY	3 cut(s)	5, 248, 417
CviQI	GTAC	2 cut(s)	144, 532
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	210, 315, 357, 492
DpnII	GATC	4 cut(s)	208, 313, 355, 490
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	3 cut(s)	120, 172, 434
FaeI	CATG	3 cut(s)	314, 470, 497
FalI	AAGNNNNNCTT	2 cut(s)	499, 531
FatI	CATG	3 cut(s)	310, 466, 493
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	384, 543
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	314, 470, 497
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	52, 501
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	156, 166, 396
Hpy188I	TCNGA	2 cut(s)	283, 506
Hpy188III	TCNNGA	2 cut(s)	467, 566
Hpy8I	GTNNAC	3 cut(s)	156, 166, 396
HpyAV	CCTTC	2 cut(s)	433, 501
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	2 cut(s)	104, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	3 cut(s)	314, 470, 497
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	208, 313, 355, 490
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	384, 543
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	4 cut(s)	210, 315, 357, 492
MboI	GATC	4 cut(s)	208, 313, 355, 490
MboII	GAAGA	1 cut(s)	455
MfeI	CAATTG	2 cut(s)	272, 483
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	190, 410
MluCI	AATT	6 cut(s)	66, 88, 228, 272, 459, 483
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	2 cut(s)	16, 72
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	3 cut(s)	321, 420, 580
MslI	CAYNNNNRTG	1 cut(s)	309
MspR9I	CCNGG	3 cut(s)	122, 174, 436
MunI	CAATTG	2 cut(s)	272, 483
MvaI	CCWGG	3 cut(s)	122, 174, 436
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	4 cut(s)	208, 313, 355, 490
NlaIII	CATG	3 cut(s)	314, 470, 497
PagI	TCATGA	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	52, 501
Pfl23II	CGTACG	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	103
Psp6I	CCWGG	3 cut(s)	120, 172, 434
PspGI	CCWGG	3 cut(s)	120, 172, 434
PspLI	CGTACG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	145, 533
RsaNI	GTAC	2 cut(s)	144, 532
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	321, 420, 580
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	4 cut(s)	208, 313, 355, 490
ScrFI	CCNGG	3 cut(s)	122, 174, 436
SduI	GDGCHC	2 cut(s)	190, 410
SetI	ASST	6 cut(s)	145, 228, 250, 419, 512, 537
SfaNI	GCATC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	66, 88, 228, 272, 459, 483
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	384, 543
StyD4I	CCNGG	3 cut(s)	120, 172, 434
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	2 cut(s)	92, 554
TasI	AATT	6 cut(s)	66, 88, 228, 272, 459, 483
TfiI	GAWTC	2 cut(s)	52, 501
Tru1I	TTAA	3 cut(s)	321, 420, 580
Tru9I	TTAA	3 cut(s)	321, 420, 580
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	465
XapI	RAATTY	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	2 cut(s)	384, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.