Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

18301365 .. 18305794

Gene Structure 4430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023112

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCAACGTCATCCGCCCCCAAGGAGAATTGGGACTATGAGGCCCTCATCGATGGAGGTGCAGTCGCCAAGGCCGAGGTCGAGGTCTCCGGCGCTGGTGATAAGGAAGGTGGAGGAGAAGTCGGAATGAAGCAGCTTCGGGAACAGTTCATGATCCACACTCGCCTCAGTAGGAAAGGCTGTACTGGGATAAACGTTACTCCAAAAAGCTTGCCCAGGATCATGCGAATTACGAGTCAGCTGAAGATGATGATTAGGATTTCTCTCCGTACGGGTGAATATGTTGCTCTGGAAAGCATTGAAACCAAATACTTGCAATGCCTCCTTATTACATTGATTTGGGTTTATGGGAATAGCTTCAAGTCATTTCTTGTTGCTGTGCTTGCAAGAAAATACATTTTGGATGAGCTCAATTGTATAGTTCAGAAACAGCAAGTGGAAATCACAGTAGCAAGCATGAAGCCATGTAGGTGTATAAATATGGAACCGACATATACATGGGCTAGTGGAGCAGAACCAACTGAAATCTCAAATGAAAATGAGATAGACTCAACACTTCAAGGTGATGCAGATAGTAAGAAGAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

197

Amino Acids

21.86

Weight (kDa)

7.57

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	2 cut(s)	148, 227
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	184, 271
AgsI	TTSAA	3 cut(s)	302, 361, 560
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	5 cut(s)	136, 210, 241, 357, 409
AluI	AGCT	5 cut(s)	136, 210, 241, 357, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	148, 227
AoxI	GGCC	2 cut(s)	42, 72
ApeKI	GCWGC	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	110, 287, 575
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
Bsa29I	ATCGAT	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	21, 69, 75, 215
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 105, 135
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	4 cut(s)	21, 69, 75, 215
BseGI	GGATG	2 cut(s)	11, 409
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	44, 74
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	90
BsiWI	CGTACG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	44, 74
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	153, 219
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	44, 74
BspCNI	CTCAG	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	148, 227
BspTNI	GGTCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	4 cut(s)	21, 69, 75, 215
BssMI	GATC	2 cut(s)	153, 219
BssT1I	CCWWGG	2 cut(s)	21, 69
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	147, 448
Bst6I	CTCTTC	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	212, 384, 454
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	11, 409
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	156, 222
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	153, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 509
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	44, 74
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	11, 409
Cac8I	GCNNGC	3 cut(s)	212, 384, 454
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	183, 270
CviAII	CATG	5 cut(s)	151, 223, 457, 465, 498
CviQI	GTAC	2 cut(s)	183, 270
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	155, 221
DpnII	GATC	2 cut(s)	153, 219
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	21, 69
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	21, 69
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	2 cut(s)	21, 69
FaeI	CATG	5 cut(s)	154, 226, 460, 468, 501
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	150, 222, 456, 464, 497
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	44, 74
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	5 cut(s)	154, 226, 460, 468, 501
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	2 cut(s)	235, 548
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	3 cut(s)	110, 287, 575
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	125, 426
Hpy188III	TCNNGA	3 cut(s)	140, 151, 290
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	147, 448
HpyCH4IV	ACGT	2 cut(s)	8, 195
HpyCH4V	TGCA	4 cut(s)	62, 316, 386, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 509
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	8, 195
Hsp92II	CATG	5 cut(s)	154, 226, 460, 468, 501
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	153, 219
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	6 cut(s)	81, 103, 171, 202, 229, 275
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	8, 195
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	155, 221
MboI	GATC	2 cut(s)	153, 219
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	28, 228, 412
MlyI	GAGTC	2 cut(s)	244, 542
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	9 cut(s)	34, 50, 56, 70, 76, 107, 176, 332, 576
MroXI	GAANNNNTTC	1 cut(s)	356
MslI	CAYNNNNRTG	2 cut(s)	469, 496
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	217
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	383, 509
NdeII	GATC	2 cut(s)	153, 219
NlaIII	CATG	5 cut(s)	154, 226, 460, 468, 501
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	356
Pfl23II	CGTACG	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	243, 542
PpsI	GAGTC	2 cut(s)	243, 542
Psp124BI	GAGCTC	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspLI	CGTACG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	2 cut(s)	184, 271
RsaNI	GTAC	2 cut(s)	183, 270
RseI	CAYNNNNRTG	2 cut(s)	469, 496
SacI	GAGCTC	1 cut(s)	411
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	153, 219
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	244, 542
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	556
SmiMI	CAYNNNNRTG	2 cut(s)	469, 496
Sse9I	AATT	3 cut(s)	28, 228, 412
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	21, 69
TaaI	ACNGT	2 cut(s)	147, 448
TaiI	ACGT	2 cut(s)	11, 198
TaqI	TCGA	2 cut(s)	51, 81
TasI	AATT	3 cut(s)	28, 228, 412
TatI	WGTACW	1 cut(s)	182
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	139, 143, 473, 549
TspGWI	ACGGA	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.