FvH4_5g03471
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000706
Physical Location & Seq
Forward (+)
2065077 .. 2065738
662 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03471.t1

Sequence Viewer

Length: 405 bp
ATGGCTTTGGTTTGTGTTGCAGGATGCACACAAACTAATGGTCTTGGCATTGACAACAATATATGCAAATCTCTAGTGGCGACACGAGGATATGCTTGCCAAGAACATCAAGTGATAACAAAAGATGGCTACATTCTCGGCTTGCAAAGAATTCCCTATGGACGGTATGGTGACAAATCGACCATGCATAAGAGACCGCCGGTTTTGGTTCAACATGGAATTACATTGGATGCAGCATCATGGTTACTCAATCCACCGAATCAAGCTTTGGCATTCATGTTAGCTGAAAGGCCCGATTGCTCATCTAAGTCACGTATCCACACCGCTCGTAAAAGTTGCTACTCAAACATATATATATGGCTGAGCAATTCTACATCCATGGTCTCCGGGAGTTTCCTCCGCTAG

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

9.3

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 25 - 84 4.3e-18 Partial alpha/beta-hydrolase lipase region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 326
AciI CCGC 3 cut(s) 197, 324, 400
AcsI RAATTY 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 2 cut(s) 266, 284
AluI AGCT 2 cut(s) 266, 284
Alw26I GTCTC 2 cut(s) 187, 388
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 182
BauI CACGAG 1 cut(s) 84
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 119
BciVI GTATCC 1 cut(s) 326
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 187, 388
BfaI CTAG 2 cut(s) 74, 403
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 1 cut(s) 234
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 3 cut(s) 14, 220, 245
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 314
BsaI GGTCTC 2 cut(s) 187, 388
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse118I RCCGGY 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 3 cut(s) 29, 235, 374
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 200, 387
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 187, 388
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 292
Bso31I GGTCTC 2 cut(s) 187, 388
Bsp1720I GCTNAGC 1 cut(s) 362
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 3 cut(s) 197, 324, 400
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 354
BspTNI GGTCTC 2 cut(s) 187, 388
BsrBI CCGCTC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 378
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 97, 143
BstDEI CTNAG 2 cut(s) 306, 362
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 29, 235, 374
BstMAI GTCTC 2 cut(s) 187, 388
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 245
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 29, 235, 374
Cac8I GCNNGC 2 cut(s) 97, 143
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 291
CviAII CATG 5 cut(s) 184, 215, 240, 277, 379
CviJI RGCY 7 cut(s) 5, 129, 141, 266, 284, 292, 361
CviKI_1 RGCY 7 cut(s) 5, 129, 141, 266, 284, 292, 361
DdeI CTNAG 2 cut(s) 306, 362
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 2 cut(s) 187, 388
EcoRI GAATTC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 187, 218, 243, 280, 382
FatI CATG 5 cut(s) 183, 214, 239, 276, 378
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 36, 242, 361
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 74, 403
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 292
HapII CCGG 2 cut(s) 200, 387
Hin1II CATG 5 cut(s) 187, 218, 243, 280, 382
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 259
HpaII CCGG 2 cut(s) 200, 387
HphI GGTGA 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 6 cut(s) 20, 27, 66, 145, 187, 233
HpyF3I CTNAG 2 cut(s) 306, 362
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 5 cut(s) 187, 218, 243, 280, 382
LpnPI CCDG 3 cut(s) 6, 213, 400
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 3 cut(s) 14, 220, 245
MaeI CTAG 2 cut(s) 74, 403
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 3 cut(s) 170, 243, 309
MbiI CCGCTC 1 cut(s) 326
MluCI AATT 3 cut(s) 150, 219, 367
MnlI CCTC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 189
MspI CCGG 2 cut(s) 200, 387
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 388
NcoI CCATGG 1 cut(s) 378
NlaIII CATG 5 cut(s) 187, 218, 243, 280, 382
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 170, 309
NsiI ATGCAT 1 cut(s) 189
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 386
PkrI GCNGC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 314
PspPI GGNCC 1 cut(s) 291
SatI GCNGC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 388
SetI ASST 3 cut(s) 268, 286, 316
SfaNI GCATC 3 cut(s) 14, 220, 245
Sse9I AATT 3 cut(s) 150, 219, 367
SsiI CCGC 3 cut(s) 197, 324, 400
SspMI CTAG 2 cut(s) 74, 403
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 179
TasI AATT 3 cut(s) 150, 219, 367
TfiI GAWTC 1 cut(s) 259
TseFI GTSAC 2 cut(s) 170, 309
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 170, 309
TspDTI ATGAA 1 cut(s) 265
XapI RAATTY 1 cut(s) 150
XspI CTAG 2 cut(s) 74, 403
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.