RchiOBHm_Chr2g0157851
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000706
Physical Location & Seq
Reverse (-)
74216234 .. 74216902
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52657

Sequence Viewer

Length: 396 bp
ATGATAGTCCAAGTTCTTAAGGAAATCTGCTCCAAACCAGGCGTTGACTGCACAAACTTGATGACCTCTTTCACAGTGATAAGAGATGGAAAAGTTGCGATGTTCGACTACAATGACAAGGAGGAGAACCAACAACACTACGGTCAGGACACCCCTCCAGAGTACAAAATGGCGAGCATACCGCATGACATTCCTCTCTTCCTCGGTTATGGAGGGGCAGATGCGCTTTCTGATGTCCAAGATGTGAAGCTATTGCTCAACAGCCTCAAAGATCATGATGGAGATAAGCTTGTGATTCAGTACATAGATGATTATGCTCATGCAGATTTTGTCATGGGTGAAAATGCTAAACAAGATGTGTATGATCCTCTCATGGCTTTCTTCAAACTTCAGTGA

Protein Analysis

131

Amino Acids

14.81

Weight (kDa)

4.48

Isoelectric Point (pI)

22.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 2 cut(s) 164, 302
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 250, 289
AluI AGCT 2 cut(s) 250, 289
AlwI GGATC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 350
BccI CCATC 2 cut(s) 80, 272
BciT130I CCWGG 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 34
Bsp143I GATC 2 cut(s) 271, 364
BspACI CCGC 1 cut(s) 182
BspHI TCATGA 1 cut(s) 274
BspPI GGATC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 271, 364
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 76, 143
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 175
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 274, 367
BstMBI GATC 2 cut(s) 271, 364
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 163, 301
CviAII CATG 5 cut(s) 185, 275, 320, 334, 373
CviJI RGCY 4 cut(s) 250, 264, 289, 377
CviKI_1 RGCY 4 cut(s) 250, 264, 289, 377
CviQI GTAC 2 cut(s) 163, 301
DpnI GATC 2 cut(s) 273, 366
DpnII GATC 2 cut(s) 271, 364
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 5 cut(s) 188, 278, 323, 337, 376
FatI CATG 5 cut(s) 184, 274, 319, 333, 372
GlaI GCGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 141
HhaI GCGC 1 cut(s) 226
Hin1II CATG 5 cut(s) 188, 278, 323, 337, 376
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 146, 158, 275
Hpy8I GTNNAC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 76, 143
HpyCH4V TGCA 2 cut(s) 51, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
Hsp92II CATG 5 cut(s) 188, 278, 323, 337, 376
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 271, 364
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 24, 51, 131, 171
LweI GCATC 1 cut(s) 211
MalI GATC 2 cut(s) 273, 366
MboI GATC 2 cut(s) 271, 364
MboII GAAGA 2 cut(s) 190, 373
MnlI CCTC 8 cut(s) 76, 115, 165, 204, 206, 212, 275, 378
MseI TTAA 1 cut(s) 18
MspCI CTTAAG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeII GATC 2 cut(s) 271, 364
NlaIII CATG 5 cut(s) 188, 278, 323, 337, 376
PagI TCATGA 1 cut(s) 274
PfeI GAWTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
RsaI GTAC 2 cut(s) 164, 302
RsaNI GTAC 2 cut(s) 163, 301
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 2 cut(s) 271, 364
ScrFI CCNGG 1 cut(s) 39
SetI ASST 3 cut(s) 68, 252, 291
SfaNI GCATC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SsiI CCGC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 76, 143
TaqI TCGA 1 cut(s) 105
TatI WGTACW 2 cut(s) 162, 300
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 81
TspRI CASTG 1 cut(s) 81
Vha464I CTTAAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.