Rroxscaffold_1G00036760
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000706
Physical Location & Seq
Forward (+)
53696903 .. 53698992
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036760.1

Sequence Viewer

Length: 669 bp
ATGGCCAAGTACCCTTCAAACCCTCTCGCTTCTTGTGGCTCTGCTTTGTGCTTTTGCAGCTGCAGGAATCAACGAGTCTTGATCAAAATGGATGCTGCAGCATGGCTAATCAATCCTCCGGATCAAGCTTTGGCGTTTATCTTAGCCGACAAGGGGTTTGATGTATGGCTTGCTAATGCTCGAGGAACGCAGGCTAGCCGTGGACACCAATCACTTAGTACTAATGATCCGACTTATTGGGAATGGACATGGGATCAATTGGCTGCTTATGATCTTCCTGCTTTCTTTAATTATATGAACAATCAAACAGACAGAAAGTACACTATGTTGGCCATTCACTGGGAACATTTGATCGGGAGAGGAACAATAACAATGTTTGATTACAATTTTCCGGTCATTAACAAGCAACACTACAATCAGCTTACTCCTCCGGTGTACAACATGGCAAGCATTCCGAAAGACGTTCCTCTTTTCTTTGGCTATGGAGGGAGAGATGCACTTTCGGACGTCAATGATGTGAAGGCTTTGCTTAATGACCTTAGTGATCATGACAAGGGCAAGCTTGTGGAACAATATGTGGAGGAGTATGCTCATATGGATTTCATTATGGGTGGGAATGCCAATCAAAAAGTCTACGATCCTCTGCTCACTTTCTTCGGGCAACATTGA

Protein Analysis

222

Amino Acids

25.28

Weight (kDa)

5.55

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
AccB7I CCANNNNNTGG 1 cut(s) 339
AccI GTMKAC 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 118
AclWI GGATC 4 cut(s) 129, 221, 261, 632
AcoI YGGCCR 2 cut(s) 3, 330
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 4 cut(s) 11, 220, 320, 437
AfiI CCNNNNNNNGG 2 cut(s) 153, 339
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 4 cut(s) 60, 128, 421, 562
AluI AGCT 4 cut(s) 60, 128, 421, 562
AlwI GGATC 4 cut(s) 129, 221, 261, 632
Ama87I CYCGRG 1 cut(s) 180
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 2 cut(s) 3, 330
ApeKI GCWGC 5 cut(s) 57, 60, 95, 98, 263
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 180
BalI TGGCCA 2 cut(s) 5, 332
BbvI GCAGC 5 cut(s) 47, 69, 82, 110, 250
BceAI ACGGC 1 cut(s) 183
BclI TGATCA 2 cut(s) 81, 544
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 61, 96
BisI GCNGC 5 cut(s) 58, 61, 96, 99, 264
BlsI GCNGC 5 cut(s) 59, 62, 97, 100, 265
BmcAI AGTACT 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 82, 484
BmtI GCTAGC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 3 cut(s) 118, 391, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 339
Bse1I ACTGG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 153, 339
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 2 cut(s) 417, 596
BseXI GCAGC 5 cut(s) 47, 69, 82, 110, 250
BshFI GGCC 2 cut(s) 5, 332
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 3 cut(s) 119, 392, 431
BslI CCNNNNNNNGG 2 cut(s) 153, 339
BsmI GAATGC 2 cut(s) 450, 622
BsnI GGCC 2 cut(s) 5, 332
BsoBI CYCGRG 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
BspANI GGCC 2 cut(s) 5, 332
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 1 cut(s) 547
BspMAI CTGCAG 2 cut(s) 65, 100
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 4 cut(s) 129, 221, 261, 632
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
BssNI GRCGYC 1 cut(s) 507
BstACI GRCGYC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 5 cut(s) 171, 192, 196, 448, 560
BstDEI CTNAG 3 cut(s) 142, 215, 539
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 8 cut(s) 84, 124, 229, 256, 274, 354, 547, 640
BstMBI GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSFI CTRYAG 2 cut(s) 61, 96
BstV1I GCAGC 5 cut(s) 47, 69, 82, 110, 250
BsuRI GGCC 2 cut(s) 5, 332
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 5 cut(s) 171, 192, 196, 448, 560
CciI TCATGA 1 cut(s) 547
Csp6I GTAC 4 cut(s) 10, 219, 319, 436
CviAII CATG 4 cut(s) 102, 249, 442, 548
CviQI GTAC 4 cut(s) 10, 219, 319, 436
DdeI CTNAG 3 cut(s) 142, 215, 539
DpnI GATC 8 cut(s) 83, 123, 228, 255, 273, 353, 546, 639
DpnII GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
EaeI YGGCCR 2 cut(s) 3, 330
Eco88I CYCGRG 1 cut(s) 180
FaeI CATG 4 cut(s) 105, 252, 445, 551
FatI CATG 4 cut(s) 101, 248, 441, 547
FauNDI CATATG 1 cut(s) 594
FbaI TGATCA 2 cut(s) 81, 544
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 58, 61, 96, 99, 264
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 5 cut(s) 58, 61, 96, 99, 264
FspBI CTAG 1 cut(s) 195
GluI GCNGC 5 cut(s) 58, 61, 96, 99, 264
HaeIII GGCC 2 cut(s) 5, 332
HapII CCGG 3 cut(s) 119, 392, 431
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 4 cut(s) 105, 252, 445, 551
HindIII AAGCTT 2 cut(s) 126, 560
HinfI GANTC 2 cut(s) 67, 75
HpaII CCGG 3 cut(s) 119, 392, 431
Hpy166II GTNNAC 4 cut(s) 203, 321, 436, 634
Hpy188I TCNGA 3 cut(s) 231, 456, 505
Hpy188III TCNNGA 4 cut(s) 79, 119, 355, 548
Hpy8I GTNNAC 4 cut(s) 203, 321, 436, 634
HpyAV CCTTC 2 cut(s) 24, 514
HpyCH4IV ACGT 2 cut(s) 462, 507
HpyCH4V TGCA 4 cut(s) 57, 63, 98, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 3 cut(s) 142, 215, 539
HpySE526I ACGT 2 cut(s) 462, 507
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 4 cut(s) 105, 252, 445, 551
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 2 cut(s) 81, 544
Kzo9I GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
LpnPI CCDG 7 cut(s) 49, 132, 176, 291, 325, 405, 444
Lsp1109I GCAGC 5 cut(s) 47, 69, 82, 110, 250
LweI GCATC 2 cut(s) 82, 484
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 462, 507
MalI GATC 8 cut(s) 83, 123, 228, 255, 273, 353, 546, 639
MboI GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
MboII GAAGA 2 cut(s) 266, 646
MfeI CAATTG 1 cut(s) 257
MlsI TGGCCA 2 cut(s) 5, 332
MluCI AATT 3 cut(s) 257, 289, 385
MluNI TGGCCA 2 cut(s) 5, 332
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 9 cut(s) 33, 126, 176, 353, 438, 477, 479, 574, 651
Mox20I TGGCCA 2 cut(s) 5, 332
MroI TCCGGA 1 cut(s) 118
MscI TGGCCA 2 cut(s) 5, 332
MseI TTAA 3 cut(s) 288, 399, 531
Msp20I TGGCCA 2 cut(s) 5, 332
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 3 cut(s) 119, 392, 431
MunI CAATTG 1 cut(s) 257
Mva1269I GAATGC 2 cut(s) 450, 622
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 594
NdeII GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 4 cut(s) 105, 252, 445, 551
PaeR7I CTCGAG 1 cut(s) 180
PagI TCATGA 1 cut(s) 547
PctI GAATGC 2 cut(s) 450, 622
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 5 cut(s) 59, 62, 97, 100, 265
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PspXI VCTCGAGB 1 cut(s) 180
PstI CTGCAG 2 cut(s) 65, 100
PvuII CAGCTG 1 cut(s) 60
RsaI GTAC 4 cut(s) 11, 220, 320, 437
RsaNI GTAC 4 cut(s) 10, 219, 319, 436
SaqAI TTAA 3 cut(s) 288, 399, 531
SatI GCNGC 5 cut(s) 58, 61, 96, 99, 264
Sau3AI GATC 8 cut(s) 81, 121, 226, 253, 271, 351, 544, 637
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 84
SetI ASST 7 cut(s) 62, 130, 423, 465, 510, 540, 564
SfaNI GCATC 2 cut(s) 82, 484
SfcI CTRYAG 2 cut(s) 61, 96
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 3 cut(s) 257, 289, 385
SspMI CTAG 1 cut(s) 195
TaiI ACGT 2 cut(s) 465, 510
TaqI TCGA 1 cut(s) 181
TasI AATT 3 cut(s) 257, 289, 385
TatI WGTACW 3 cut(s) 218, 318, 435
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 3 cut(s) 288, 399, 531
Tru9I TTAA 3 cut(s) 288, 399, 531
TscAI CASTG 1 cut(s) 344
TseI GCWGC 5 cut(s) 57, 60, 95, 98, 263
TspDTI ATGAA 2 cut(s) 311, 592
TspRI CASTG 1 cut(s) 344
Van91I CCANNNNNTGG 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 633
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 508
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.