Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Forward (+)

29522792 .. 29526448

Gene Structure 3657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTATAGAAATTATTATTTTTACTTAATTATTTTAGCTGCAGGAATCAACAGTCTTGATCAAAATGGTATTTGCAAATCATTGGTGGGGACACAAGGCTATACTTGCCAAGACCATCAAGTAACGACAGAAGATGGTTACATCCTCGGATTGCAGAGGATTCCATCTGGACGTTCCAGTAACAATTCGACCGCTCAGAAGCTGCCTGTTTTATTACAACATGGACTTACGATGGATGCTGCAGCATGGCTAATCAATCCTCCAGATCAAGCTTTGGCGTTTATCTTAGCCGACAAGGGGTTTGATGTATGGCTTGCTAATGCTCGAGGAACGCAGGCTAGCCGTGGACACCAATCACTTAGTACTAATGATCCGACTTATTGGGAATGGACATGGGATCAATTGGCTGCTTATGATCTTCCTGCTTTCTTTAATTATGTGAACAATCAAACAGGACAGAAAGTACACTATGTTGGCCATTCACTGGGAACATTGTCAGTATTAGCTGCCTTGTCACAACAAAAGCTGAGTAACACACTAAGATCAGCTGCTTTACTTAGCCCGGTTGCTTATCTGGGTCAGATCACCACAGTGTTGGGAAAAATTTCTGCTCAATCACATTCTGCTGATAAGGTCATTATTAGTTTGCATGAAATATATTCCCTAATTCAGGTAGCTGGACAGAACTTGGAGACATTTCTCTGCTCACAACCGGGTGTGGACTGCTCCAATTTTATGGCGGCTGTAACCGGTCCTAATTGCTGCATAACTCCAACAAGTTCAAATCTTATCTTTCAGCATATACCACAGTCCACTTCCACAAAAAATATGGTACATTTGTCTGAAATGATCAGGAGAGGAACAATAACAATGTTTGATTACAATTTTCCGGCCATTAACATGCAACACTACAATCAGCTTACTCCTCCGGTGTACAACATGGCAAGCATTCCGAAAGACGTTCCTCTTTTCTTGGGCTATGGAGGGAGAGATGCACTTTCGGACGTCAATGATGTGAAGGCTTTGCTTAATGACCTTAGTGATCATGACAAGGACAAGCTTGTGGAACAATACGTGGAGGAGTATGCTCATATGGATTTCATTATGGGTGGGAATGCCAATCAAAAAGTCTACGATCCTCTGCTCACTTTCTTCGGGCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

388

Amino Acids

42.9

Weight (kDa)

5.75

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	29 - 86	1.6e-20	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	69 - 188	2.9e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1008
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	1131
AciI	CCGC	2 cut(s)	192, 740
AclWI	GGATC	3 cut(s)	365, 405, 1130
AcoI	YGGCCR	2 cut(s)	475, 891
AcsI	RAATTY	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	1005
AfaI	GTAC	4 cut(s)	364, 465, 834, 935
AfiI	CCNNNNNNNGG	3 cut(s)	297, 484, 670
AgeI	ACCGGT	1 cut(s)	749
AgsI	TTSAA	1 cut(s)	783
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	9 cut(s)	38, 202, 272, 506, 526, 548, 677, 919, 1060
AluI	AGCT	9 cut(s)	38, 202, 272, 506, 526, 548, 677, 919, 1060
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	3 cut(s)	365, 405, 1130
AlwNI	CAGNNNCTG	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	2 cut(s)	475, 891
ApeKI	GCWGC	8 cut(s)	38, 202, 239, 242, 407, 506, 548, 762
ApoI	RAATTY	1 cut(s)	603
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsiGI	ACCGGT	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	2 cut(s)	563, 714
AsuHPI	GGTGA	1 cut(s)	577
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	752
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BalI	TGGCCA	1 cut(s)	477
BbvI	GCAGC	8 cut(s)	25, 189, 226, 254, 394, 493, 535, 749
BccI	CCATC	4 cut(s)	123, 128, 172, 226
BceAI	ACGGC	1 cut(s)	327
BclI	TGATCA	3 cut(s)	58, 849, 1042
BcnI	CCSGG	2 cut(s)	563, 714
BcoDI	GTCTC	1 cut(s)	686
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	39, 240
BisI	GCNGC	9 cut(s)	39, 203, 240, 243, 408, 507, 549, 741, 763
BlsI	GCNGC	9 cut(s)	40, 204, 241, 244, 409, 508, 550, 742, 764
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	2 cut(s)	563, 714
Bme18I	GGWCC	1 cut(s)	752
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	752
BmrFI	CCNGG	2 cut(s)	563, 714
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	226, 982
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	246
BpuMI	CCSGG	2 cut(s)	563, 714
BsaAI	YACGTR	1 cut(s)	1075
BsaHI	GRCGYC	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	145, 343
BsaWI	WCCGGW	2 cut(s)	749, 928
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 484, 670
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	177, 489
BseDI	CCNNGG	2 cut(s)	145, 343
BseGI	GGATG	2 cut(s)	141, 241
BseLI	CCNNNNNNNGG	3 cut(s)	297, 484, 670
BseMII	CTCAG	2 cut(s)	209, 518
BseNI	ACTGG	2 cut(s)	177, 489
BseRI	GAGGAG	2 cut(s)	915, 1094
BseXI	GCAGC	8 cut(s)	25, 189, 226, 254, 394, 493, 535, 749
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	477, 893
BshTI	ACCGGT	1 cut(s)	749
BsiEI	CGRYCG	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	5 cut(s)	563, 713, 750, 890, 929
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	297, 484, 670
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	2 cut(s)	948, 1120
BsnI	GGCC	2 cut(s)	477, 893
BsoBI	CYCGRG	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	933
BspACI	CCGC	2 cut(s)	192, 740
BspANI	GGCC	2 cut(s)	477, 893
BspCNI	CTCAG	2 cut(s)	208, 519
BspHI	TCATGA	1 cut(s)	1045
BspMAI	CTGCAG	2 cut(s)	43, 244
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	3 cut(s)	365, 405, 1130
BsrBI	CCGCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	933
BsrI	ACTGG	2 cut(s)	177, 489
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	2 cut(s)	145, 343
BssNI	GRCGYC	1 cut(s)	1005
Bst4CI	ACNGT	3 cut(s)	53, 592, 810
BstACI	GRCGYC	1 cut(s)	1005
BstAUI	TGTACA	1 cut(s)	933
BstBAI	YACGTR	1 cut(s)	1075
BstC8I	GCNNGC	4 cut(s)	315, 336, 340, 946
BstDEI	CTNAG	7 cut(s)	195, 286, 359, 527, 539, 557, 1037
BstDSI	CCRYGG	1 cut(s)	343
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	141, 241
BstMAI	GTCTC	1 cut(s)	686
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	2 cut(s)	561, 712
BstSFI	CTRYAG	2 cut(s)	39, 240
BstV1I	GCAGC	8 cut(s)	25, 189, 226, 254, 394, 493, 535, 749
BstXI	CCANNNNNNTGG	2 cut(s)	595, 736
BsuRI	GGCC	2 cut(s)	477, 893
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	141, 241
BtsIMutI	CAGTG	2 cut(s)	482, 597
Cac8I	GCNNGC	4 cut(s)	315, 336, 340, 946
CaiI	CAGNNNCTG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	1045
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	1 cut(s)	752
Csp6I	GTAC	4 cut(s)	363, 464, 833, 934
CspAI	ACCGGT	1 cut(s)	749
CviAII	CATG	7 cut(s)	221, 246, 393, 650, 901, 940, 1046
CviQI	GTAC	4 cut(s)	363, 464, 833, 934
DdeI	CTNAG	7 cut(s)	195, 286, 359, 527, 539, 557, 1037
EaeI	YGGCCR	2 cut(s)	475, 891
Eco47I	GGWCC	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	668
FaeI	CATG	7 cut(s)	224, 249, 396, 653, 904, 943, 1049
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	7 cut(s)	220, 245, 392, 649, 900, 939, 1045
FauNDI	CATATG	1 cut(s)	1092
FbaI	TGATCA	3 cut(s)	58, 849, 1042
FblI	GTMKAC	1 cut(s)	1131
Fnu4HI	GCNGC	9 cut(s)	39, 203, 240, 243, 408, 507, 549, 741, 763
FokI	GGATG	2 cut(s)	128, 248
Fsp4HI	GCNGC	9 cut(s)	39, 203, 240, 243, 408, 507, 549, 741, 763
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	9 cut(s)	39, 203, 240, 243, 408, 507, 549, 741, 763
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	477, 893
HapII	CCGG	5 cut(s)	563, 713, 750, 890, 929
Hin1I	GRCGYC	1 cut(s)	1005
Hin1II	CATG	7 cut(s)	224, 249, 396, 653, 904, 943, 1049
HindIII	AAGCTT	2 cut(s)	270, 1058
HinfI	GANTC	2 cut(s)	45, 160
HpaII	CCGG	5 cut(s)	563, 713, 750, 890, 929
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	7 cut(s)	347, 442, 466, 721, 813, 934, 1132
Hpy188I	TCNGA	7 cut(s)	149, 198, 375, 582, 844, 954, 1003
Hpy188III	TCNNGA	5 cut(s)	56, 168, 263, 853, 1046
Hpy8I	GTNNAC	7 cut(s)	347, 442, 466, 721, 813, 934, 1132
HpyAV	CCTTC	1 cut(s)	1012
HpyCH4III	ACNGT	3 cut(s)	53, 592, 810
HpyCH4IV	ACGT	4 cut(s)	172, 960, 1005, 1074
HpyCH4V	TGCA	8 cut(s)	41, 75, 154, 242, 649, 765, 904, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	7 cut(s)	195, 286, 359, 527, 539, 557, 1037
HpySE526I	ACGT	4 cut(s)	172, 960, 1005, 1074
Hsp92I	GRCGYC	1 cut(s)	1005
Hsp92II	CATG	7 cut(s)	224, 249, 396, 653, 904, 943, 1049
Ksp22I	TGATCA	3 cut(s)	58, 849, 1042
LmnI	GCTCC	1 cut(s)	731
Lsp1109I	GCAGC	8 cut(s)	25, 189, 226, 254, 394, 493, 535, 749
LweI	GCATC	2 cut(s)	226, 982
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	4 cut(s)	172, 960, 1005, 1074
MaeIII	GTNAC	6 cut(s)	121, 137, 179, 513, 530, 745
MbiI	CCGCTC	1 cut(s)	194
MboII	GAAGA	3 cut(s)	143, 410, 1144
MfeI	CAATTG	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MmeI	TCCRAC	2 cut(s)	398, 797
Mox20I	TGGCCA	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	4 cut(s)	26, 432, 897, 1029
MslI	CAYNNNNRTG	2 cut(s)	590, 899
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	5 cut(s)	563, 713, 750, 890, 929
MspR9I	CCNGG	2 cut(s)	563, 714
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	2 cut(s)	948, 1120
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	563, 714
NdeI	CATATG	1 cut(s)	1092
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	7 cut(s)	224, 249, 396, 653, 904, 943, 1049
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	904
OliI	CACNNNNGTG	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	324
PagI	TCATGA	1 cut(s)	1045
PctI	GAATGC	2 cut(s)	948, 1120
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	45, 160
PflMI	CCANNNNNTGG	1 cut(s)	484
PinAI	ACCGGT	1 cut(s)	749
PkrI	GCNGC	9 cut(s)	40, 204, 241, 244, 409, 508, 550, 742, 764
Ppu21I	YACGTR	1 cut(s)	1075
PspPI	GGNCC	1 cut(s)	752
PspXI	VCTCGAGB	1 cut(s)	324
PstI	CTGCAG	2 cut(s)	43, 244
PstNI	CAGNNNCTG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	4 cut(s)	364, 465, 834, 935
RsaNI	GTAC	4 cut(s)	363, 464, 833, 934
RseI	CAYNNNNRTG	2 cut(s)	590, 899
SaqAI	TTAA	4 cut(s)	26, 432, 897, 1029
SatI	GCNGC	9 cut(s)	39, 203, 240, 243, 408, 507, 549, 741, 763
Sau96I	GGNCC	1 cut(s)	752
ScaI	AGTACT	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	563, 714
SfaNI	GCATC	2 cut(s)	226, 982
SfcI	CTRYAG	2 cut(s)	39, 240
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	752
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	590, 899
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SsiI	CCGC	2 cut(s)	192, 740
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	561, 712
TaaI	ACNGT	3 cut(s)	53, 592, 810
TaiI	ACGT	4 cut(s)	175, 963, 1008, 1077
TaqI	TCGA	2 cut(s)	188, 325
TatI	WGTACW	3 cut(s)	362, 463, 933
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	2 cut(s)	45, 160
Tru1I	TTAA	4 cut(s)	26, 432, 897, 1029
Tru9I	TTAA	4 cut(s)	26, 432, 897, 1029
TscAI	CASTG	2 cut(s)	489, 597
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	8 cut(s)	38, 202, 239, 242, 407, 506, 548, 762
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	2 cut(s)	666, 1090
TspRI	CASTG	2 cut(s)	489, 597
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	752
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	1 cut(s)	603
XceI	RCATGY	1 cut(s)	904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	1131
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	1006
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.