RLG00000021029
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
71185351 .. 71186137
787 bp
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UTR
Exon/CDS
Intron
RLM00000021029

Sequence Viewer

Length: 513 bp
ATGGTAGTTCAAGTTCTTAAGGAAATCTGCTCCAAACCAGGCGTTGACCGCACAAACTTGATGACCTCTTTCACAGTGATAAGAGATGGAAAAGTTGCGATGTTCGACTACAATGACAAGGAGGAGAACCAACAACACTACGGTCAGGACACCCCTCCAGAGTACAAAATGGCGAGCATTCCGCATGACATTCCTCTTTTCCTCGGTTATGGAGGGGCAGATGCGCTTTCTGATGTCCAAGATGTGAAGTTATTGCTCAACAGCCTCAAAGATCATGATGGAGATAAGCTTGTGATTCAGTACATAGATGATTATGCTCATGTTGATTTTGTCATGGGTGAAAATGCTGATTTTGTCATAGATGATTATGCTCATGCTGATTTTGTCATGTGTATGATCCTCTCATGGCTTTCTTCAAACTTCAGTGAAAAACTGAAAACCTCATTTGTACAAAGTAATATCAAAACTTTCTTTCTTCTTATTTTACGAACAAAAGTCATGCTAAAACAGTAA

Protein Analysis

171

Amino Acids

19.4

Weight (kDa)

4.85

Isoelectric Point (pI)

23.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 182
AclWI GGATC 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 406
AfaI GTAC 3 cut(s) 164, 302, 450
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 11, 417
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
AlwI GGATC 1 cut(s) 391
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 350
BccI CCATC 2 cut(s) 80, 272
BciT130I CCWGG 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 137
BsmI GAATGC 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 448
Bsp143I GATC 2 cut(s) 271, 396
BspACI CCGC 2 cut(s) 49, 182
BspHI TCATGA 1 cut(s) 274
BspPI GGATC 1 cut(s) 391
BspTI CTTAAG 1 cut(s) 17
BsrGI TGTACA 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 271, 396
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 76, 143, 510
BstAFI CTTAAG 1 cut(s) 17
BstAUI TGTACA 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 175
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 274, 399
BstMBI GATC 2 cut(s) 271, 396
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 81, 430
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 163, 301, 449
CviAII CATG 8 cut(s) 185, 275, 320, 334, 374, 388, 405, 499
CviJI RGCY 3 cut(s) 264, 289, 409
CviKI_1 RGCY 3 cut(s) 264, 289, 409
CviQI GTAC 3 cut(s) 163, 301, 449
DpnI GATC 2 cut(s) 273, 398
DpnII GATC 2 cut(s) 271, 396
Eco57I CTGAAG 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 8 cut(s) 188, 278, 323, 337, 377, 391, 408, 502
FatI CATG 8 cut(s) 184, 274, 319, 333, 373, 387, 404, 498
GlaI GCGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 141
HhaI GCGC 1 cut(s) 226
Hin1II CATG 8 cut(s) 188, 278, 323, 337, 377, 391, 408, 502
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 146, 158, 275
Hpy8I GTNNAC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 76, 143, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
Hsp92II CATG 8 cut(s) 188, 278, 323, 337, 377, 391, 408, 502
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 271, 396
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 24, 51, 131, 171
LweI GCATC 1 cut(s) 211
MalI GATC 2 cut(s) 273, 398
MboI GATC 2 cut(s) 271, 396
MboII GAAGA 2 cut(s) 405, 467
MnlI CCTC 9 cut(s) 76, 115, 165, 204, 206, 212, 275, 410, 451
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeII GATC 2 cut(s) 271, 396
NlaIII CATG 8 cut(s) 188, 278, 323, 337, 377, 391, 408, 502
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PsrI GAACNNNNNNTAC 1 cut(s) 29
RsaI GTAC 3 cut(s) 164, 302, 450
RsaNI GTAC 3 cut(s) 163, 301, 449
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 2 cut(s) 271, 396
ScrFI CCNGG 1 cut(s) 39
SetI ASST 3 cut(s) 68, 291, 443
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SsiI CCGC 2 cut(s) 49, 182
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 3 cut(s) 76, 143, 510
TaqI TCGA 1 cut(s) 105
TatI WGTACW 3 cut(s) 162, 300, 448
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 81, 430
TspRI CASTG 2 cut(s) 81, 430
Vha464I CTTAAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.