Rroxscaffold_1G00036780
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000706
Physical Location & Seq
Forward (+)
53716635 .. 53718724
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036780.1

Sequence Viewer

Length: 951 bp
ATGGCCAAGTACCCTTCAAACCCTCTCGCTTCTTGTGGCTCTACTTTGTGCTTTTGCAGCTGCGAGGAATCAACAGTCTTGATCAAAATGGTAACGACGAGAAGATGGTTACATTCTCGGATTGCGAGAGGATTCCATCCGGACGTTCCAAGAACAATTCGACCGCTCGAAGCTGCCGTGTTATTACAACATGGACTTACAATGGATGCTGCAGCATGGCTAATCAATCCTCCAGATCAAGCTTTGGCGTTTATCTTAGCCGACAAGGGGTTTGATGTATGGCTTGCTAATGCTCGAGGAACGCAGGCTAGCCGTGGACACCAATCACTTAGTACTAATGATCCGACTTATTGGGAATGGACATGGGATCAATTGGCTGCTTATGATCTTCCTGCTTTCTTTAATTATGTGAACAATCAAACAGACAGAAAGTACACTATGTTGGCCATTCACCGGGTAGCTGGACAGAACTTGGAGACATTTCTCTGCTCACAACCGGGTGTGGACTGCTCCAATTTTATGGCGGCTGTAACCGGTCCTAATTGCTGCATAACTCCAACAAGTTCAAATCTTATCTTTCAGCATATACCACAGTCCACTTCCACAAAAAATATGGTACATTTGTCCGAAATGATCGGGAGAGGAACAATAACAATGTTTGATTACAATTTTCCGGTCATTAACAAGCAACACTACAATCAGCTTACTCCTCCGGTGTACAACATGGCAAGCATTCCGAAAAACGTTCCTCTTTTCTTTGGCTATGGAGGGAGAGATGCACTTTCGGACGTCAATGATGTGAAGGCTTTGCTTAATGACCTTAGTGATCATGACAAGGACAAGCTTGTGGAACAATACGTGGAGGAGTATGCTCATATGGATTTCATTATGGGTGGGAATGCCAATAAAAAAGTCTACGATCCTCTGCTCACTTTCTTCGGGCAACATTGA

Protein Analysis

316

Amino Acids

35.48

Weight (kDa)

6.1

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 792
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 915
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 164, 524
AclI AACGTT 1 cut(s) 744
AclWI GGATC 3 cut(s) 335, 375, 914
AcoI YGGCCR 2 cut(s) 3, 444
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 5 cut(s) 11, 334, 434, 618, 719
AfiI CCNNNNNNNGG 2 cut(s) 267, 453
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 2 cut(s) 18, 567
AluBI AGCT 6 cut(s) 60, 173, 242, 461, 703, 844
AluI AGCT 6 cut(s) 60, 173, 242, 461, 703, 844
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 3 cut(s) 335, 375, 914
Ama87I CYCGRG 1 cut(s) 294
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 2 cut(s) 3, 444
ApeKI GCWGC 7 cut(s) 57, 60, 173, 209, 212, 377, 546
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsiGI ACCGGT 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 536
AsuC2I CCSGG 2 cut(s) 455, 498
AsuHPI GGTGA 1 cut(s) 443
AsuNHI GCTAGC 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 536
BaeI ACNNNNGTAYC 2 cut(s) 608, 641
BalI TGGCCA 2 cut(s) 5, 446
BbvI GCAGC 7 cut(s) 47, 69, 160, 196, 224, 364, 533
BccI CCATC 2 cut(s) 99, 144
BceAI ACGGC 2 cut(s) 161, 297
BclI TGATCA 2 cut(s) 81, 826
BcnI CCSGG 2 cut(s) 455, 498
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 8 cut(s) 58, 61, 174, 210, 213, 378, 525, 547
BlsI GCNGC 8 cut(s) 59, 62, 175, 211, 214, 379, 526, 548
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 455, 498
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 536
BmrFI CCNGG 2 cut(s) 455, 498
BmsI GCATC 2 cut(s) 196, 766
BmtI GCTAGC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 216
BpuMI CCSGG 2 cut(s) 455, 498
BsaAI YACGTR 1 cut(s) 859
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 4 cut(s) 139, 533, 673, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 453
Bse118I RCCGGY 1 cut(s) 533
BseAI TCCGGA 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 136, 211
BseLI CCNNNNNNNGG 2 cut(s) 267, 453
BseRI GAGGAG 2 cut(s) 699, 878
BseXI GCAGC 7 cut(s) 47, 69, 160, 196, 224, 364, 533
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 5, 446
BshTI ACCGGT 1 cut(s) 533
BsiEI CGRYCG 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 6 cut(s) 140, 454, 497, 534, 674, 713
BslI CCNNNNNNNGG 2 cut(s) 267, 453
BsmAI GTCTC 1 cut(s) 470
BsmI GAATGC 2 cut(s) 732, 904
BsnI GGCC 2 cut(s) 5, 446
BsoBI CYCGRG 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 717
Bsp143I GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
BspACI CCGC 2 cut(s) 164, 524
BspANI GGCC 2 cut(s) 5, 446
BspEI TCCGGA 1 cut(s) 139
BspHI TCATGA 1 cut(s) 829
BspMAI CTGCAG 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 312
BspPI GGATC 3 cut(s) 335, 375, 914
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 717
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
BssNI GRCGYC 1 cut(s) 789
Bst4CI ACNGT 2 cut(s) 76, 594
BstACI GRCGYC 1 cut(s) 789
BstAUI TGTACA 1 cut(s) 717
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 285, 306, 310, 730
BstDEI CTNAG 3 cut(s) 256, 329, 821
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 136, 211
BstKTI GATC 8 cut(s) 84, 238, 343, 370, 388, 636, 829, 922
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 453, 496
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 7 cut(s) 47, 69, 160, 196, 224, 364, 533
BstXI CCANNNNNNTGG 1 cut(s) 520
BsuRI GGCC 2 cut(s) 5, 446
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 136, 211
Cac8I GCNNGC 4 cut(s) 285, 306, 310, 730
CciI TCATGA 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 536
Csp6I GTAC 5 cut(s) 10, 333, 433, 617, 718
CspAI ACCGGT 1 cut(s) 533
CviAII CATG 5 cut(s) 191, 216, 363, 724, 830
CviQI GTAC 5 cut(s) 10, 333, 433, 617, 718
DdeI CTNAG 3 cut(s) 256, 329, 821
DpnI GATC 8 cut(s) 83, 237, 342, 369, 387, 635, 828, 921
DpnII GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
EaeI YGGCCR 2 cut(s) 3, 444
Eco47I GGWCC 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 294
FaeI CATG 5 cut(s) 194, 219, 366, 727, 833
FatI CATG 5 cut(s) 190, 215, 362, 723, 829
FauNDI CATATG 1 cut(s) 876
FbaI TGATCA 2 cut(s) 81, 826
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 8 cut(s) 58, 61, 174, 210, 213, 378, 525, 547
FokI GGATG 2 cut(s) 123, 218
Fsp4HI GCNGC 8 cut(s) 58, 61, 174, 210, 213, 378, 525, 547
FspBI CTAG 1 cut(s) 309
GluI GCNGC 8 cut(s) 58, 61, 174, 210, 213, 378, 525, 547
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 5, 446
HapII CCGG 6 cut(s) 140, 454, 497, 534, 674, 713
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 5 cut(s) 194, 219, 366, 727, 833
HindIII AAGCTT 2 cut(s) 240, 842
HinfI GANTC 2 cut(s) 68, 132
HpaII CCGG 6 cut(s) 140, 454, 497, 534, 674, 713
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 7 cut(s) 317, 412, 435, 505, 597, 718, 916
Hpy188I TCNGA 5 cut(s) 120, 345, 628, 738, 787
Hpy188III TCNNGA 5 cut(s) 79, 140, 233, 637, 830
Hpy8I GTNNAC 7 cut(s) 317, 412, 435, 505, 597, 718, 916
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 24, 796
HpyCH4III ACNGT 2 cut(s) 76, 594
HpyCH4IV ACGT 4 cut(s) 144, 744, 789, 858
HpyCH4V TGCA 4 cut(s) 57, 212, 549, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 3 cut(s) 256, 329, 821
HpySE526I ACGT 4 cut(s) 144, 744, 789, 858
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 5 cut(s) 194, 219, 366, 727, 833
Kpn2I TCCGGA 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 81, 826
Kzo9I GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 7 cut(s) 47, 69, 160, 196, 224, 364, 533
LweI GCATC 2 cut(s) 196, 766
MaeI CTAG 1 cut(s) 309
MaeII ACGT 4 cut(s) 144, 744, 789, 858
MaeIII GTNAC 3 cut(s) 91, 108, 529
MalI GATC 8 cut(s) 83, 237, 342, 369, 387, 635, 828, 921
MbiI CCGCTC 1 cut(s) 166
MboI GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
MboII GAAGA 3 cut(s) 114, 380, 928
MfeI CAATTG 1 cut(s) 371
MlsI TGGCCA 2 cut(s) 5, 446
MluCI AATT 6 cut(s) 156, 371, 403, 514, 541, 667
MluNI TGGCCA 2 cut(s) 5, 446
MmeI TCCRAC 2 cut(s) 368, 581
Mox20I TGGCCA 2 cut(s) 5, 446
MroI TCCGGA 1 cut(s) 139
MscI TGGCCA 2 cut(s) 5, 446
MseI TTAA 3 cut(s) 402, 681, 813
Msp20I TGGCCA 2 cut(s) 5, 446
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 6 cut(s) 140, 454, 497, 534, 674, 713
MspR9I CCNGG 2 cut(s) 455, 498
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 2 cut(s) 732, 904
MwoI GCNNNNNNNGC 1 cut(s) 57
NciI CCSGG 2 cut(s) 455, 498
NdeI CATATG 1 cut(s) 876
NdeII GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 5 cut(s) 194, 219, 366, 727, 833
PaeR7I CTCGAG 1 cut(s) 294
PagI TCATGA 1 cut(s) 829
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 2 cut(s) 732, 904
PfeI GAWTC 2 cut(s) 68, 132
PinAI ACCGGT 1 cut(s) 533
PkrI GCNGC 8 cut(s) 59, 62, 175, 211, 214, 379, 526, 548
Ppu21I YACGTR 1 cut(s) 859
Psp1406I AACGTT 1 cut(s) 744
PspPI GGNCC 1 cut(s) 536
PspXI VCTCGAGB 1 cut(s) 294
PstI CTGCAG 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 60
RsaI GTAC 5 cut(s) 11, 334, 434, 618, 719
RsaNI GTAC 5 cut(s) 10, 333, 433, 617, 718
SaqAI TTAA 3 cut(s) 402, 681, 813
SatI GCNGC 8 cut(s) 58, 61, 174, 210, 213, 378, 525, 547
Sau3AI GATC 8 cut(s) 81, 235, 340, 367, 385, 633, 826, 919
Sau96I GGNCC 1 cut(s) 536
ScaI AGTACT 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 455, 498
SfaNI GCATC 2 cut(s) 196, 766
SfcI CTRYAG 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 536
SlaI CTCGAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 6 cut(s) 156, 371, 403, 514, 541, 667
SsiI CCGC 2 cut(s) 164, 524
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 453, 496
TaaI ACNGT 2 cut(s) 76, 594
TaiI ACGT 4 cut(s) 147, 747, 792, 861
TaqI TCGA 3 cut(s) 160, 168, 295
TasI AATT 6 cut(s) 156, 371, 403, 514, 541, 667
TatI WGTACW 3 cut(s) 332, 432, 717
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 2 cut(s) 68, 132
Tru1I TTAA 3 cut(s) 402, 681, 813
Tru9I TTAA 3 cut(s) 402, 681, 813
TseI GCWGC 7 cut(s) 57, 60, 173, 209, 212, 377, 546
TspDTI ATGAA 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 915
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 790
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.