Rorug02G0206400
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
19378019 .. 19378267
249 bp
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UTR
Exon/CDS
Intron
Rorug02G0206400.1

Sequence Viewer

Length: 249 bp
ATGGCAGGAAGATTGAGCAAAGACGAGCTCGTCTGGGACAACGGCACTCCGTTTCACGAACCTTGTATCGATCGCATCGCCGACACCGTCGGAAAGTACGAAGCTTTGGCTTGGCTTACTGGAAGTCTGAGCTGCTTCGTTGGGCTGGGCTTGTTAGCCGAGTGGAACGACAAGGCATCCAAAATTCTGTTTGCCCCAAAAGTGTACCCATATGAGAATCTACGAGTGGAGCTCGGCGGAGAACCATAG

Protein Analysis

82

Amino Acids

9.08

Weight (kDa)

4.78

Isoelectric Point (pI)

15.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AciI CCGC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 183
AfaI GTAC 2 cut(s) 98, 206
AluBI AGCT 4 cut(s) 28, 104, 132, 232
AluI AGCT 4 cut(s) 28, 104, 132, 232
Alw21I GWGCWC 2 cut(s) 30, 234
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 183
BanII GRGCYC 2 cut(s) 30, 234
Bbv12I GWGCWC 2 cut(s) 30, 234
BbvI GCAGC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 58
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmsI GCATC 2 cut(s) 84, 185
BplI GAGNNNNNCTC 2 cut(s) 216, 248
Bsa29I ATCGAT 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 69
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 30, 234
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 30, 234
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 120
BspDI ATCGAT 1 cut(s) 69
BsrI ACTGG 1 cut(s) 124
BssMI GATC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 2 cut(s) 97, 205
CviJI RGCY 9 cut(s) 28, 104, 110, 115, 132, 145, 150, 158, 232
CviKI_1 RGCY 9 cut(s) 28, 104, 110, 115, 132, 145, 150, 158, 232
CviQI GTAC 2 cut(s) 97, 205
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
Ecl136II GAGCTC 2 cut(s) 28, 232
Eco24I GRGCYC 2 cut(s) 30, 234
Eco53kI GAGCTC 2 cut(s) 28, 232
EcoICRI GAGCTC 2 cut(s) 28, 232
EcoT38I GRGCYC 2 cut(s) 30, 234
FaiI YATR 3 cut(s) 211, 213, 247
FaqI GGGAC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 2 cut(s) 30, 234
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
GsaI CCCAGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 92, 129
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 3 cut(s) 19, 105, 131
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 84, 185
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 21
MhlI GDGCHC 2 cut(s) 30, 234
MluCI AATT 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 70
NdeI CATATG 1 cut(s) 211
NdeII GATC 1 cut(s) 70
NmeAIII GCCGAG 2 cut(s) 184, 213
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 96
PfeI GAWTC 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 134
Ple19I CGATCG 1 cut(s) 73
Psp124BI GAGCTC 2 cut(s) 30, 234
PspFI CCCAGC 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 86
PvuI CGATCG 1 cut(s) 73
RsaI GTAC 2 cut(s) 98, 206
RsaNI GTAC 2 cut(s) 97, 205
SacI GAGCTC 2 cut(s) 30, 234
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 70
SduI GDGCHC 2 cut(s) 30, 234
SetI ASST 5 cut(s) 30, 64, 106, 134, 234
SfaNI GCATC 2 cut(s) 84, 185
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 237
SstI GAGCTC 2 cut(s) 30, 234
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 183
TfiI GAWTC 1 cut(s) 217
TseI GCWGC 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 86
XapI RAATTY 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.