FvH4_5g03472
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
2065915 .. 2066232
318 bp
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UTR
Exon/CDS
Intron
FvH4_5g03472.t1

Sequence Viewer

Length: 318 bp
ATGATCAGAAGTGGAACCGTAAGTAGTTTCGATTACACTCTTCCAACAAATATACAACACTACAGACAGTCTACTCCTCCGGTGTACAACATGGCAAACATACCAAAAGACATTCCTCTTTTCATTAGCTTTGGAGCGAGAGATGCACTTTCAGACGTAAATGATGTGAAAATTTTGCTCAACGACCTCAAAAATCACGACAAGGACAAGTTTGTGGTACAATACATAAACGAGTATGCTCATCTGGATCTTGTTTTCGGTTGGAATGCCAATCAAAAAGTTTATGATCCCATGCTCGCTTTCTTCGGGCGACATTGA

Protein Analysis

106

Amino Acids

12.14

Weight (kDa)

6.38

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AclWI GGATC 2 cut(s) 255, 281
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 2 cut(s) 86, 219
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
AlwI GGATC 2 cut(s) 255, 281
ApoI RAATTY 1 cut(s) 171
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 80
BsmI GAATGC 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 3, 247, 286
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 255, 281
BsrGI TGTACA 1 cut(s) 84
BssMI GATC 3 cut(s) 3, 247, 286
Bst4CI ACNGT 2 cut(s) 19, 69
Bst6I CTCTTC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 6, 250, 289
BstMBI GATC 3 cut(s) 3, 247, 286
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 85, 218
CviAII CATG 2 cut(s) 91, 292
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
CviQI GTAC 2 cut(s) 85, 218
DpnI GATC 3 cut(s) 5, 249, 288
DpnII GATC 3 cut(s) 3, 247, 286
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
FaeI CATG 2 cut(s) 94, 295
FaiI YATR 7 cut(s) 53, 92, 101, 227, 237, 285, 293
FatI CATG 2 cut(s) 90, 291
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 71
HapII CCGG 1 cut(s) 80
Hin1II CATG 2 cut(s) 94, 295
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 72, 85
Hpy188I TCNGA 2 cut(s) 8, 154
Hpy188III TCNNGA 2 cut(s) 197, 245
Hpy8I GTNNAC 2 cut(s) 72, 85
HpyCH4III ACNGT 2 cut(s) 19, 69
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 94, 295
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 247, 286
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 2 cut(s) 93, 230
LweI GCATC 1 cut(s) 133
MaeII ACGT 1 cut(s) 156
MalI GATC 3 cut(s) 5, 249, 288
MboI GATC 3 cut(s) 3, 247, 286
MboII GAAGA 2 cut(s) 32, 295
MflI RGATCY 1 cut(s) 247
MluCI AATT 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 68, 242
MnlI CCTC 3 cut(s) 87, 126, 197
MspI CCGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 3 cut(s) 3, 247, 286
NlaIII CATG 2 cut(s) 94, 295
NlaIV GGNNCC 1 cut(s) 16
PctI GAATGC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 86, 219
RsaNI GTAC 2 cut(s) 85, 218
Sau3AI GATC 3 cut(s) 3, 247, 286
SetI ASST 3 cut(s) 131, 159, 189
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 171
TaaI ACNGT 2 cut(s) 19, 69
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 30
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 112
XapI RAATTY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.