Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Reverse (-)

75206212 .. 75207787

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG543800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCAAGTACCCTTCAAACCCTCTGCTTCTTGTGGCTCTACTTTGTGCTTTTGCAGCTGCAAGAATCAACAGTCTTGATCAAAATGGTATTTGCAAATCATTGGTGGAGACACAAGGCTATACTTGCCAAGACCATCAAGTAACGACAGAAGATGGTTACATCCTTGGATTGCAGAGGATTCCATCTGGACGTTCCAGTAACAATTTGACTGCTCAGAAGCTGCCTGTTATATTACAACATGGACTTACGATGGATGCTGCCGCATGGCTAATCAATCCTCCAGATCAAGCTTTGGCGTTTATCTTAGCCGACAAGGGGTTTGATGTATGGCTTGCTAATGCTCGAGGAACGCAGGCTAGCCGTGGACACCAATCACTTAGTACTAATGATCCGACTTATTGGGAATGGACATGGGATCAATTGGCTGCTTATGATCTTCCTGCTTTCTTTAATTATGTGAACAATCAAACAGGACAGAAAGTACACTATGTTGGCCATTCACTGGGAACATTGTCAGTATTAGCTGCCTTGTCACAACAAAAGCTGAGTAACACACTAAGATCAGCTGCTTTACTTAGCCCGGTTGCTTATCTGGGTCAGATCACCACAATGTTGGGAAAAATTTCTGCTCAATCACATTCTGCTGATGGACTCTACGCCTCTAGTATCCGCGAATATCCTCCTCAAGGTTTGGTACATTTTCATAATCTTTTCTCCAAATCCCAACAGGGTAGCTGGACAGAACTTGGTGACATTTCTCTGCTCACAACCGGGTATGGACTGCTCCAATTTTATGGCGGCTGTAACCGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

272

Amino Acids

29.64

Weight (kDa)

6.69

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	34 - 93	2.4e-20	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	76 - 196	9.1e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	1 cut(s)	675
AciI	CCGC	3 cut(s)	264, 673, 801
AclWI	GGATC	2 cut(s)	386, 426
AcoI	YGGCCR	2 cut(s)	3, 496
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	4 cut(s)	11, 385, 486, 699
AfiI	CCNNNNNNNGG	3 cut(s)	318, 505, 689
AgeI	ACCGGT	1 cut(s)	810
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	7 cut(s)	59, 223, 293, 527, 547, 569, 738
AluI	AGCT	7 cut(s)	59, 223, 293, 527, 547, 569, 738
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	386, 426
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	2 cut(s)	3, 496
ApeKI	GCWGC	7 cut(s)	56, 59, 223, 260, 428, 527, 569
ApoI	RAATTY	1 cut(s)	624
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AsiGI	ACCGGT	1 cut(s)	810
Asp700I	GAANNNNTTC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	813
AsuC2I	CCSGG	2 cut(s)	584, 775
AsuHPI	GGTGA	2 cut(s)	598, 764
AsuNHI	GCTAGC	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	813
BalI	TGGCCA	2 cut(s)	5, 498
BbvI	GCAGC	7 cut(s)	46, 68, 210, 247, 415, 514, 556
BccI	CCATC	5 cut(s)	144, 149, 193, 247, 644
BceAI	ACGGC	1 cut(s)	348
BciVI	GTATCC	1 cut(s)	680
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	584, 775
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	360, 666
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	9 cut(s)	57, 60, 224, 261, 264, 429, 528, 570, 802
BlsI	GCNGC	9 cut(s)	58, 61, 225, 262, 265, 430, 529, 571, 803
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	584, 775
Bme18I	GGWCC	1 cut(s)	813
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	584, 775
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	247
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	672
BpuMI	CCSGG	2 cut(s)	584, 775
BsaJI	CCNNGG	2 cut(s)	166, 364
BsaWI	WCCGGW	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 505, 689
Bse118I	RCCGGY	1 cut(s)	810
Bse1I	ACTGG	2 cut(s)	198, 510
BseDI	CCNNGG	2 cut(s)	166, 364
BseGI	GGATG	2 cut(s)	162, 262
BseLI	CCNNNNNNNGG	3 cut(s)	318, 505, 689
BseMII	CTCAG	2 cut(s)	230, 539
BseNI	ACTGG	2 cut(s)	198, 510
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	7 cut(s)	46, 68, 210, 247, 415, 514, 556
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	5, 498
BshTI	ACCGGT	1 cut(s)	810
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	584, 774, 811
BslI	CCNNNNNNNGG	3 cut(s)	318, 505, 689
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	5, 498
BsoBI	CYCGRG	1 cut(s)	345
Bsp143I	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
BspACI	CCGC	3 cut(s)	264, 673, 801
BspANI	GGCC	2 cut(s)	5, 498
BspCNI	CTCAG	2 cut(s)	229, 540
BspFNI	CGCG	1 cut(s)	675
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	386, 426
BsrFI	RCCGGY	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	198, 510
BssAI	RCCGGY	1 cut(s)	810
BssECI	CCNNGG	2 cut(s)	166, 364
BssMI	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	336, 357, 361
BstDEI	CTNAG	6 cut(s)	216, 307, 380, 548, 560, 578
BstDSI	CCRYGG	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	2 cut(s)	162, 262
BstFNI	CGCG	1 cut(s)	675
BstKTI	GATC	7 cut(s)	82, 289, 394, 421, 439, 566, 606
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 126
BstSCI	CCNGG	2 cut(s)	582, 773
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	7 cut(s)	46, 68, 210, 247, 415, 514, 556
BstXI	CCANNNNNNTGG	2 cut(s)	616, 797
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	5, 498
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	162, 262
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	3 cut(s)	336, 357, 361
CaiI	CAGNNNCTG	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	810
Cfr13I	GGNCC	1 cut(s)	813
Csp6I	GTAC	4 cut(s)	10, 384, 485, 698
CspAI	ACCGGT	1 cut(s)	810
CviAII	CATG	3 cut(s)	242, 267, 414
CviQI	GTAC	4 cut(s)	10, 384, 485, 698
DdeI	CTNAG	6 cut(s)	216, 307, 380, 548, 560, 578
DpnI	GATC	7 cut(s)	81, 288, 393, 420, 438, 565, 605
DpnII	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
EaeI	YGGCCR	2 cut(s)	3, 496
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	813
Eco88I	CYCGRG	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	245, 270, 417
FatI	CATG	3 cut(s)	241, 266, 413
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	9 cut(s)	57, 60, 224, 261, 264, 429, 528, 570, 802
FokI	GGATG	2 cut(s)	149, 269
Fsp4HI	GCNGC	9 cut(s)	57, 60, 224, 261, 264, 429, 528, 570, 802
FspBI	CTAG	2 cut(s)	360, 666
GluI	GCNGC	9 cut(s)	57, 60, 224, 261, 264, 429, 528, 570, 802
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	5, 498
HapII	CCGG	3 cut(s)	584, 774, 811
Hin1II	CATG	3 cut(s)	245, 270, 417
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	66, 181, 654
HpaII	CCGG	3 cut(s)	584, 774, 811
HphI	GGTGA	2 cut(s)	598, 764
Hpy166II	GTNNAC	3 cut(s)	368, 463, 487
Hpy188I	TCNGA	3 cut(s)	219, 396, 603
Hpy188III	TCNNGA	3 cut(s)	77, 189, 284
Hpy8I	GTNNAC	3 cut(s)	368, 463, 487
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	56, 62, 96, 175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 126
HpyF3I	CTNAG	6 cut(s)	216, 307, 380, 548, 560, 578
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	245, 270, 417
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
LmnI	GCTCC	1 cut(s)	792
Lsp1109I	GCAGC	7 cut(s)	46, 68, 210, 247, 415, 514, 556
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	360, 666
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	7 cut(s)	142, 158, 200, 534, 551, 752, 806
MalI	GATC	7 cut(s)	81, 288, 393, 420, 438, 565, 605
MboI	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
MboII	GAAGA	2 cut(s)	164, 431
MfeI	CAATTG	1 cut(s)	422
MlsI	TGGCCA	2 cut(s)	5, 498
MluCI	AATT	5 cut(s)	205, 422, 454, 624, 791
MluNI	TGGCCA	2 cut(s)	5, 498
MlyI	GAGTC	1 cut(s)	648
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	7 cut(s)	33, 171, 291, 341, 673, 693, 696
Mox20I	TGGCCA	2 cut(s)	5, 498
MroXI	GAANNNNTTC	1 cut(s)	625
MscI	TGGCCA	2 cut(s)	5, 498
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	2 cut(s)	5, 498
MspA1I	CMGCKG	2 cut(s)	59, 569
MspI	CCGG	3 cut(s)	584, 774, 811
MspR9I	CCNGG	2 cut(s)	584, 775
MunI	CAATTG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	56, 126
NciI	CCSGG	2 cut(s)	584, 775
NdeII	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	245, 270, 417
NmuCI	GTSAC	2 cut(s)	534, 752
PaeR7I	CTCGAG	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	66, 181
PflMI	CCANNNNNTGG	1 cut(s)	505
PinAI	ACCGGT	1 cut(s)	810
PkrI	GCNGC	9 cut(s)	58, 61, 225, 262, 265, 430, 529, 571, 803
PleI	GAGTC	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	648
PspPI	GGNCC	1 cut(s)	813
PspXI	VCTCGAGB	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	59, 569
RsaI	GTAC	4 cut(s)	11, 385, 486, 699
RsaNI	GTAC	4 cut(s)	10, 384, 485, 698
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	9 cut(s)	57, 60, 224, 261, 264, 429, 528, 570, 802
Sau3AI	GATC	7 cut(s)	79, 286, 391, 418, 436, 563, 603
Sau96I	GGNCC	1 cut(s)	813
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	1 cut(s)	648
ScrFI	CCNGG	2 cut(s)	584, 775
SetI	ASST	9 cut(s)	61, 196, 225, 295, 529, 549, 571, 694, 740
SfaNI	GCATC	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	813
SlaI	CTCGAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	345, 687
SmoI	CTYRAG	2 cut(s)	345, 687
Sse9I	AATT	5 cut(s)	205, 422, 454, 624, 791
SsiI	CCGC	3 cut(s)	264, 673, 801
SspMI	CTAG	2 cut(s)	360, 666
StyD4I	CCNGG	2 cut(s)	582, 773
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	346
TasI	AATT	5 cut(s)	205, 422, 454, 624, 791
TatI	WGTACW	2 cut(s)	383, 484
TauI	GCSGC	2 cut(s)	266, 804
TfiI	GAWTC	2 cut(s)	66, 181
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	2 cut(s)	534, 752
TseI	GCWGC	7 cut(s)	56, 59, 223, 260, 428, 527, 569
Tsp45I	GTSAC	2 cut(s)	534, 752
TspDTI	ATGAA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	510
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	813
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	2 cut(s)	360, 666
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.