Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Forward (+)

9258715 .. 9261417

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1107700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTAACCCTTCAACCACTCTAATATTTATGGCTCTACTTTGTATTTCAGCAGCAGCAGCAGCGACAAAAAATAAGCTGTACTCAATCGAAAATTCGAATGTTGGCCTTTGCAAATCATTAGTGGAGACACAAGGCTACATTTGCCAAGAACATAAAGTAACAACAGAAGATGGCTACATCCTTGGCCTGCAGAGGATTCCAAATGGACGATCCGGTAATACGACAGCCGACAAGCTGCCTATTCTGTTACAACATGGATTGTTACTGGATGCTTCATCATGGCTATTCAACCCGCCGGAAGAATCTTTGCCATTTATCTTGGCTGATCATGGTTTTGATGTCTGGCTTTCCAATGCTCGTGGGACGAGATCTAGTCGTGGACACACATCACTTAGTCCTAATGATCCGGCTTACTGGGACTGGTCATGGGATGAAATGGTTGTTTATGATCTTCCTACTTCAGTCCAGTACGTCCGTGATCAAACAGGACAGAAATTACACTACGTCGGACATTCCATGGGAACTTTGGCTGTCCTCGCTGCCTTCTCGGAGAAAAAGCTGTTTAACTTGCTAAGATCAGCTGCTTTGCTTAGCCCGGTTGCTTATCTGGGTCAAATACCCTCACTGATTTTAAGAACTGCTGCCGAAACATTTTTAGCAGAAGAAGTGAAATTGTTGGGATTCCCGGAAGTTCCAAACGAGCAGATTATAAAACTAGTGCAATCGATCTGCAGATCACAGGGAATTGACTGCTCCGACTTACTGGCAGCTGTCGGAGGCCCAAATTGTTGCCTCAGTCATTCAAGTATAGATGCTCTCTTTAAGAACCTTCTCCAGCCCACTTCAACAAAGAACCTTATACATTTTGCTCAGATGATCAGGAAAGGAACCATAGAAATGTACGATTACAGTCACGCATACATGAACATGGAACACTACAGGAAGCCTACTCCTCCCGTGTACAACATGGCAAACATTCCGAAGGACATTCCTCTTTTCCTCAGCTATGGAGGGAGAGATTCAATTTCTGACGTGAATGATGTGGGAGTTTTGCTTGACGACCTCGAAGATCATGATAAGGACAAGCTTGTGGTACTGTACAGAGAGGATTATGCTCATTTGGATTTTATCATGAGTGTGAATGCCAATCAACTTGTGTATAATCCTCTAGAGGCCTTCATCAGGCTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

399

Amino Acids

44.31

Weight (kDa)

5.51

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	40 - 98	3.8e-19	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	81 - 240	3.2e-12	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	207, 401
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	6 cut(s)	83, 473, 905, 965, 1098, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	1185
AgsI	TTSAA	5 cut(s)	15, 292, 807, 849, 1026
AhlI	ACTAGT	1 cut(s)	718
AjiI	CACGTC	1 cut(s)	1036
AluBI	AGCT	7 cut(s)	79, 238, 562, 584, 773, 1008, 1090
AluI	AGCT	7 cut(s)	79, 238, 562, 584, 773, 1008, 1090
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	207, 401
AoxI	GGCC	4 cut(s)	106, 187, 781, 1176
ApeKI	GCWGC	9 cut(s)	53, 56, 59, 62, 238, 542, 584, 644, 770
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	782
AsuC2I	CCSGG	2 cut(s)	599, 689
AsuII	TTCGAA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	1004
BbvI	GCAGC	9 cut(s)	65, 68, 71, 74, 225, 529, 571, 631, 782
BccI	CCATC	1 cut(s)	167
BclI	TGATCA	3 cut(s)	328, 481, 879
BcnI	CCSGG	2 cut(s)	599, 689
BcoDI	GTCTC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	3 cut(s)	375, 719, 1172
BfmI	CTRYAG	3 cut(s)	191, 733, 940
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	9 cut(s)	54, 57, 60, 63, 239, 543, 585, 645, 771
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	9 cut(s)	55, 58, 61, 64, 240, 544, 586, 646, 772
Bme1390I	CCNGG	2 cut(s)	599, 689
BmgBI	CACGTC	1 cut(s)	1036
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	2 cut(s)	599, 689
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	262, 805
BmuI	ACTGGG	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	821
Bpu10I	CCTNAGC	1 cut(s)	1004
Bpu1102I	GCTNAGC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	599, 689
Bsa29I	ATCGAT	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	184, 519
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	1185
Bse1I	ACTGG	5 cut(s)	273, 422, 428, 469, 771
BseCI	ATCGAT	1 cut(s)	728
BseDI	CCNNGG	2 cut(s)	184, 519
BseGI	GGATG	3 cut(s)	180, 277, 439
BseLI	CCNNNNNNNGG	1 cut(s)	1185
BseMII	CTCAG	3 cut(s)	811, 887, 1018
BseNI	ACTGG	5 cut(s)	273, 422, 428, 469, 771
BseRI	GAGGAG	1 cut(s)	945
BseXI	GCAGC	9 cut(s)	65, 68, 71, 74, 225, 529, 571, 631, 782
BshFI	GGCC	4 cut(s)	108, 189, 783, 1178
BshVI	ATCGAT	1 cut(s)	728
BsiSI	CCGG	5 cut(s)	216, 299, 410, 599, 689
BslFI	GGGAC	2 cut(s)	379, 434
BslI	CCNNNNNNNGG	1 cut(s)	1185
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	379, 434
BsmI	GAATGC	1 cut(s)	1150
BsnI	GGCC	4 cut(s)	108, 189, 783, 1178
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1407I	TGTACA	2 cut(s)	963, 1101
Bsp1720I	GCTNAGC	1 cut(s)	593
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	4 cut(s)	108, 189, 783, 1178
BspCNI	CTCAG	3 cut(s)	810, 886, 1017
BspDI	ATCGAT	1 cut(s)	728
BspHI	TCATGA	2 cut(s)	1075, 1134
BspLI	GGNNCC	1 cut(s)	892
BspMAI	CTGCAG	2 cut(s)	195, 737
BspPI	GGATC	2 cut(s)	207, 401
BspT104I	TTCGAA	1 cut(s)	98
BsrGI	TGTACA	2 cut(s)	963, 1101
BsrI	ACTGG	5 cut(s)	273, 422, 428, 469, 771
BssECI	CCNNGG	2 cut(s)	184, 519
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	184, 519
Bst2BI	CACGAG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	914, 1101
BstAUI	TGTACA	2 cut(s)	963, 1101
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	6 cut(s)	395, 575, 593, 797, 873, 1004
BstDSI	CCRYGG	1 cut(s)	519
BstENI	CCTNNNNNAGG	1 cut(s)	1183
BstF5I	GGATG	3 cut(s)	180, 277, 439
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 62, 144, 539
BstSCI	CCNGG	2 cut(s)	597, 687
BstSFI	CTRYAG	3 cut(s)	191, 733, 940
BstV1I	GCAGC	9 cut(s)	65, 68, 71, 74, 225, 529, 571, 631, 782
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	728
BsuRI	GGCC	4 cut(s)	108, 189, 783, 1178
BsuTUI	ATCGAT	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	1036
BtsCI	GGATG	3 cut(s)	180, 277, 439
BtsIMutI	CAGTG	1 cut(s)	626
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	2 cut(s)	1075, 1134
Cfr13I	GGNCC	1 cut(s)	782
ClaI	ATCGAT	1 cut(s)	728
Csp6I	GTAC	6 cut(s)	82, 472, 904, 964, 1097, 1102
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviQI	GTAC	6 cut(s)	82, 472, 904, 964, 1097, 1102
DdeI	CTNAG	6 cut(s)	395, 575, 593, 797, 873, 1004
Eco130I	CCWWGG	2 cut(s)	184, 519
Eco147I	AGGCCT	1 cut(s)	1178
Eco57I	CTGAAG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	1183
EcoT14I	CCWWGG	2 cut(s)	184, 519
ErhI	CCWWGG	2 cut(s)	184, 519
FaqI	GGGAC	2 cut(s)	379, 434
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	3 cut(s)	328, 481, 879
Fnu4HI	GCNGC	9 cut(s)	54, 57, 60, 63, 239, 543, 585, 645, 771
FokI	GGATG	3 cut(s)	167, 284, 446
Fsp4HI	GCNGC	9 cut(s)	54, 57, 60, 63, 239, 543, 585, 645, 771
FspBI	CTAG	3 cut(s)	375, 719, 1172
GluI	GCNGC	9 cut(s)	54, 57, 60, 63, 239, 543, 585, 645, 771
GsuI	CTGGAG	1 cut(s)	821
HaeIII	GGCC	4 cut(s)	108, 189, 783, 1178
HapII	CCGG	5 cut(s)	216, 299, 410, 599, 689
HindIII	AAGCTT	1 cut(s)	1088
HinfI	GANTC	4 cut(s)	199, 305, 684, 1022
HpaII	CCGG	5 cut(s)	216, 299, 410, 599, 689
Hpy166II	GTNNAC	2 cut(s)	383, 964
Hpy188I	TCNGA	7 cut(s)	512, 553, 760, 779, 876, 984, 1033
Hpy188III	TCNNGA	4 cut(s)	883, 1076, 1135, 1172
Hpy8I	GTNNAC	2 cut(s)	383, 964
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	5 cut(s)	21, 556, 842, 979, 1189
HpyCH4III	ACNGT	2 cut(s)	914, 1101
HpyCH4IV	ACGT	3 cut(s)	474, 507, 1035
HpyCH4V	TGCA	4 cut(s)	114, 193, 724, 735
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 62, 144, 539
HpyF3I	CTNAG	6 cut(s)	395, 575, 593, 797, 873, 1004
HpySE526I	ACGT	3 cut(s)	474, 507, 1035
Ksp22I	TGATCA	3 cut(s)	328, 481, 879
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	9 cut(s)	65, 68, 71, 74, 225, 529, 571, 631, 782
LweI	GCATC	2 cut(s)	262, 805
MaeI	CTAG	3 cut(s)	375, 719, 1172
MaeII	ACGT	3 cut(s)	474, 507, 1035
MaeIII	GTNAC	4 cut(s)	160, 249, 264, 914
MboII	GAAGA	5 cut(s)	182, 314, 446, 677, 1082
MflI	RGATCY	1 cut(s)	371
MluCI	AATT	6 cut(s)	94, 497, 674, 747, 787, 1026
MmeI	TCCRAC	3 cut(s)	490, 757, 783
MseI	TTAA	4 cut(s)	567, 635, 825, 1195
MslI	CAYNNNNRTG	3 cut(s)	899, 929, 1139
MspA1I	CMGCKG	2 cut(s)	584, 773
MspI	CCGG	5 cut(s)	216, 299, 410, 599, 689
MspR9I	CCNGG	2 cut(s)	599, 689
Mva1269I	GAATGC	1 cut(s)	1150
MwoI	GCNNNNNNNGC	4 cut(s)	59, 62, 144, 539
NciI	CCSGG	2 cut(s)	599, 689
NcoI	CCATGG	1 cut(s)	519
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	914
NspV	TTCGAA	1 cut(s)	98
PagI	TCATGA	2 cut(s)	1075, 1134
PceI	AGGCCT	1 cut(s)	1178
PctI	GAATGC	1 cut(s)	1150
PfeI	GAWTC	4 cut(s)	199, 305, 684, 1022
PfoI	TCCNGGA	1 cut(s)	687
PkrI	GCNGC	9 cut(s)	55, 58, 61, 64, 240, 544, 586, 646, 772
PsiI	TTATAA	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	892
PspPI	GGNCC	1 cut(s)	782
PstI	CTGCAG	2 cut(s)	195, 737
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	2 cut(s)	584, 773
RsaI	GTAC	6 cut(s)	83, 473, 905, 965, 1098, 1103
RsaNI	GTAC	6 cut(s)	82, 472, 904, 964, 1097, 1102
RseI	CAYNNNNRTG	3 cut(s)	899, 929, 1139
SaqAI	TTAA	4 cut(s)	567, 635, 825, 1195
SatI	GCNGC	9 cut(s)	54, 57, 60, 63, 239, 543, 585, 645, 771
Sau96I	GGNCC	1 cut(s)	782
ScrFI	CCNGG	2 cut(s)	599, 689
SfaNI	GCATC	2 cut(s)	262, 805
SfcI	CTRYAG	3 cut(s)	191, 733, 940
SfuI	TTCGAA	1 cut(s)	98
SmiMI	CAYNNNNRTG	3 cut(s)	899, 929, 1139
SpeI	ACTAGT	1 cut(s)	718
Sse9I	AATT	6 cut(s)	94, 497, 674, 747, 787, 1026
SseBI	AGGCCT	1 cut(s)	1178
SsiI	CCGC	1 cut(s)	296
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	3 cut(s)	375, 719, 1172
StuI	AGGCCT	1 cut(s)	1178
StyD4I	CCNGG	2 cut(s)	597, 687
StyI	CCWWGG	2 cut(s)	184, 519
TaaI	ACNGT	2 cut(s)	914, 1101
TaiI	ACGT	3 cut(s)	477, 510, 1038
TaqI	TCGA	4 cut(s)	90, 98, 728, 1068
TasI	AATT	6 cut(s)	94, 497, 674, 747, 787, 1026
TatI	WGTACW	3 cut(s)	81, 963, 1101
TfiI	GAWTC	4 cut(s)	199, 305, 684, 1022
Tru1I	TTAA	4 cut(s)	567, 635, 825, 1195
Tru9I	TTAA	4 cut(s)	567, 635, 825, 1195
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	9 cut(s)	53, 56, 59, 62, 238, 542, 584, 644, 770
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	5 cut(s)	267, 450, 941, 1171, 1181
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	633
XagI	CCTNNNNNAGG	1 cut(s)	1183
XapI	RAATTY	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XspI	CTAG	3 cut(s)	375, 719, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.