Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Forward (+)

73831267 .. 73832508

Gene Structure 1242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATATCATTCTACTCCAAAATGGCCAAGTACCCTTCAGCTAGTATTCTACTTGTGGCTCTAGTTTGTGTTTCAGGAGTTGCACAAACCAGAGGTCATGATATTCACAATGGTATTTGCAAATCACTTGTGGAGACACGAGGCTATATTTGCCAAGAACATCAAGTAACAACAGAAGATGGTTACATTCTCGGGTTGCAGAGAATTCCTTATGGACGGTCTGGTAGAAATTCAGCCACAGATCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTATAATTGATGCTTCATCATGGCTACTCAATCCACCGGATCAGGCTTTGGCGTTCATCTTGGCTGACAAAGGGTTTGATGTATGGCTTGCTAATTCTCGAGGAACGGACTCTAGCCGTGGACACAAATCACTTACTACTAATGATCCTGCTTATTGGGAATGGACATGGGAACAGTTGGCTGCTTATGATCTTCCTGCTTTGTTCAATTATGTGAACAAGCAAACAGGACAGAAGTCACACTACGTTGGCCATTCCTTAGGAACATTGACAATACTAGCTGCCTTGTCCCAACAAAAATTAAGAAACTCATTGAGATCAGCTGCTTTGCTTAGCCCAATTGCTTATCTGGGTCAGATATCCACACTGTTTATAAGAGTTACTACTCAAACATTTTATGCTGAGCAATTCTACATCGTTGGTGTCCGGGAATTTCCTCCGCTACCGCCATTAGAACGAACTCTGCAGACCATTATTTGCATACAACCGGGCGTGGACTGTTCCAACTTTCTGGCTGCTATAACAGGTCCAAATTGTTGCCTAAATCCTTCAAGTTTAGATCTTTACTATAATCATACACCACAATCCACTGCCACAAAGAATGCCATACATTTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCACTCACAAATCTGCAGCACTACAATACGTTTACTCCTCCAGTGTACAACATGGCAAACATTCAGAAAGACATTCCTCTTTTCCTCAGCTATGGAGGGAGAGATGCACTTTCAGACGTCAACGATGTGAAGACTTTGCTTAATGACCTCAATGATCATGACAAGGACAAGCTTGTCGAACAATACATAGAGGAGTATGCTCATTATGATTTCGTTATGGGTGAGAATGCCCGTCAGAAAGTCTATGATCCTCTGCTCGCTTTCTTCAGGCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

404

Amino Acids

45.39

Weight (kDa)

6.49

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	42 - 102	8.2e-20	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	84 - 206	7.2e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	278, 647
AasI	GACNNNNNNGTC	1 cut(s)	1109
AatII	GACGTC	1 cut(s)	1056
AciI	CCGC	3 cut(s)	251, 713, 719
AclWI	GGATC	3 cut(s)	321, 413, 1178
AcoI	YGGCCR	2 cut(s)	24, 523
AcsI	RAATTY	3 cut(s)	204, 229, 704
AcuI	CTGAAG	2 cut(s)	21, 1186
AcyI	GRCGYC	1 cut(s)	1053
AfaI	GTAC	2 cut(s)	32, 983
AgsI	TTSAA	2 cut(s)	481, 825
AluBI	AGCT	5 cut(s)	41, 554, 596, 1026, 1108
AluI	AGCT	5 cut(s)	41, 554, 596, 1026, 1108
Alw26I	GTCTC	2 cut(s)	128, 894
AlwI	GGATC	3 cut(s)	321, 413, 1178
Ama87I	CYCGRG	2 cut(s)	191, 372
AoxI	GGCC	2 cut(s)	24, 523
ApeKI	GCWGC	5 cut(s)	455, 554, 596, 788, 952
ApoI	RAATTY	3 cut(s)	204, 229, 704
ArsI	GACNNNNNNTTYG	4 cut(s)	79, 111, 332, 364
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	2 cut(s)	701, 762
AsuHPI	GGTGA	1 cut(s)	1169
AvaI	CYCGRG	2 cut(s)	191, 372
AvaII	GGWCC	1 cut(s)	800
AxyI	CCTNAGG	1 cut(s)	532
BalI	TGGCCA	2 cut(s)	26, 525
BarI	GAAGNNNNNNTAC	2 cut(s)	500, 532
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	1073
BbvCI	CCTCAGC	1 cut(s)	1022
BbvI	GCAGC	5 cut(s)	442, 541, 583, 775, 964
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	375
BclI	TGATCA	2 cut(s)	897, 1090
BcnI	CCSGG	2 cut(s)	701, 762
BcoDI	GTCTC	2 cut(s)	128, 894
BfaI	CTAG	4 cut(s)	42, 62, 387, 551
BfmI	CTRYAG	2 cut(s)	737, 950
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	6 cut(s)	251, 456, 555, 597, 789, 953
BlpI	GCTNAGC	2 cut(s)	605, 675
BlsI	GCNGC	6 cut(s)	252, 457, 556, 598, 790, 954
Bme1390I	CCNGG	2 cut(s)	701, 762
Bme18I	GGWCC	1 cut(s)	800
BmeT110I	CYCGRG	2 cut(s)	191, 372
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	910
BmrFI	CCNGG	2 cut(s)	701, 762
BmsI	GCATC	2 cut(s)	274, 1030
BoxI	GACNNNNGTC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	1073
BpmI	CTGGAG	1 cut(s)	960
Bpu10I	CCTNAGC	1 cut(s)	1022
Bpu1102I	GCTNAGC	2 cut(s)	605, 675
BpuMI	CCSGG	2 cut(s)	701, 762
BsaHI	GRCGYC	1 cut(s)	1053
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	955, 985
Bse1I	ACTGG	1 cut(s)	977
Bse21I	CCTNAGG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	666, 905, 1036
BseNI	ACTGG	1 cut(s)	977
BseRI	GAGGAG	2 cut(s)	963, 1142
BseXI	GCAGC	5 cut(s)	442, 541, 583, 775, 964
BshFI	GGCC	2 cut(s)	26, 525
BsiHKCI	CYCGRG	2 cut(s)	191, 372
BsiSI	CCGG	3 cut(s)	311, 700, 761
BslFI	GGGAC	1 cut(s)	547
BsmAI	GTCTC	2 cut(s)	128, 894
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	2 cut(s)	880, 1168
BsnI	GGCC	2 cut(s)	26, 525
BsoBI	CYCGRG	2 cut(s)	191, 372
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
Bsp1720I	GCTNAGC	2 cut(s)	605, 675
BspACI	CCGC	3 cut(s)	251, 713, 719
BspANI	GGCC	2 cut(s)	26, 525
BspCNI	CTCAG	3 cut(s)	667, 904, 1035
BspHI	TCATGA	2 cut(s)	97, 1093
BspLI	GGNNCC	1 cut(s)	910
BspMAI	CTGCAG	2 cut(s)	741, 954
BspPI	GGATC	3 cut(s)	321, 413, 1178
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	1 cut(s)	977
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
BssNI	GRCGYC	1 cut(s)	1053
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst4CI	ACNGT	4 cut(s)	219, 450, 642, 773
Bst6I	CTCTTC	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	1053
BstAUI	TGTACA	1 cut(s)	981
BstC8I	GCNNGC	2 cut(s)	363, 1194
BstDEI	CTNAG	5 cut(s)	532, 605, 675, 891, 1022
BstDSI	CCRYGG	1 cut(s)	391
BstKTI	GATC	9 cut(s)	244, 316, 421, 466, 593, 835, 900, 1093, 1186
BstMAI	GTCTC	2 cut(s)	128, 894
BstMBI	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 271
BstPAI	GACNNNNGTC	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	699, 760
BstSFI	CTRYAG	2 cut(s)	737, 950
BstV1I	GCAGC	5 cut(s)	442, 541, 583, 775, 964
BstV2I	GAAGAC	1 cut(s)	1073
BstX2I	RGATCY	1 cut(s)	832
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	26, 525
BtgI	CCRYGG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	638, 861, 984
Cac8I	GCNNGC	2 cut(s)	363, 1194
CciI	TCATGA	2 cut(s)	97, 1093
Cfr13I	GGNCC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	31, 982
CviAII	CATG	6 cut(s)	98, 269, 294, 441, 988, 1094
CviQI	GTAC	2 cut(s)	31, 982
DdeI	CTNAG	5 cut(s)	532, 605, 675, 891, 1022
DpnI	GATC	9 cut(s)	243, 315, 420, 465, 592, 834, 899, 1092, 1185
DpnII	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
DrdI	GACNNNNNNGTC	1 cut(s)	1109
DseDI	GACNNNNNNGTC	1 cut(s)	1109
EaeI	YGGCCR	2 cut(s)	24, 523
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Eco32I	GATATC	2 cut(s)	6, 633
Eco47I	GGWCC	1 cut(s)	800
Eco57I	CTGAAG	2 cut(s)	21, 1186
Eco81I	CCTNAGG	1 cut(s)	532
Eco88I	CYCGRG	2 cut(s)	191, 372
EcoRI	GAATTC	1 cut(s)	204
EcoRV	GATATC	2 cut(s)	6, 633
FaeI	CATG	6 cut(s)	101, 272, 297, 444, 991, 1097
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	6 cut(s)	97, 268, 293, 440, 987, 1093
FbaI	TGATCA	2 cut(s)	897, 1090
Fnu4HI	GCNGC	6 cut(s)	251, 456, 555, 597, 789, 953
Fsp4HI	GCNGC	6 cut(s)	251, 456, 555, 597, 789, 953
FspBI	CTAG	4 cut(s)	42, 62, 387, 551
GluI	GCNGC	6 cut(s)	251, 456, 555, 597, 789, 953
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	26, 525
HapII	CCGG	3 cut(s)	311, 700, 761
Hin1I	GRCGYC	1 cut(s)	1053
Hin1II	CATG	6 cut(s)	101, 272, 297, 444, 991, 1097
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HindIII	AAGCTT	1 cut(s)	1106
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	3 cut(s)	311, 700, 761
HphI	GGTGA	1 cut(s)	1169
Hpy166II	GTNNAC	6 cut(s)	395, 490, 769, 969, 982, 1057
Hpy188I	TCNGA	7 cut(s)	246, 630, 894, 902, 1002, 1051, 1173
Hpy188III	TCNNGA	4 cut(s)	75, 98, 372, 1094
Hpy8I	GTNNAC	6 cut(s)	395, 490, 769, 969, 982, 1057
HpyAV	CCTTC	2 cut(s)	45, 831
HpyCH4III	ACNGT	4 cut(s)	219, 450, 642, 773
HpyCH4IV	ACGT	3 cut(s)	519, 965, 1053
HpyCH4V	TGCA	8 cut(s)	83, 120, 199, 265, 739, 753, 952, 1043
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 271
HpyF3I	CTNAG	5 cut(s)	532, 605, 675, 891, 1022
HpySE526I	ACGT	3 cut(s)	519, 965, 1053
Hsp92I	GRCGYC	1 cut(s)	1053
Hsp92II	CATG	6 cut(s)	101, 272, 297, 444, 991, 1097
Ksp22I	TGATCA	2 cut(s)	897, 1090
Kzo9I	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
Lsp1109I	GCAGC	5 cut(s)	442, 541, 583, 775, 964
LweI	GCATC	2 cut(s)	274, 1030
MaeI	CTAG	4 cut(s)	42, 62, 387, 551
MaeII	ACGT	3 cut(s)	519, 965, 1053
MaeIII	GTNAC	4 cut(s)	166, 182, 510, 652
MalI	GATC	9 cut(s)	243, 315, 420, 465, 592, 834, 899, 1092, 1185
MboI	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
MboII	GAAGA	5 cut(s)	188, 458, 926, 1078, 1192
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	1 cut(s)	832
MlsI	TGGCCA	2 cut(s)	26, 525
MluNI	TGGCCA	2 cut(s)	26, 525
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	801
Mox20I	TGGCCA	2 cut(s)	26, 525
MscI	TGGCCA	2 cut(s)	26, 525
MseI	TTAA	2 cut(s)	575, 1077
MslI	CAYNNNNRTG	1 cut(s)	917
Msp20I	TGGCCA	2 cut(s)	26, 525
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	3 cut(s)	311, 700, 761
MspR9I	CCNGG	2 cut(s)	701, 762
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	2 cut(s)	880, 1168
MwoI	GCNNNNNNNGC	2 cut(s)	150, 271
NciI	CCSGG	2 cut(s)	701, 762
NdeII	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
NlaIII	CATG	6 cut(s)	101, 272, 297, 444, 991, 1097
NlaIV	GGNNCC	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	372
PagI	TCATGA	2 cut(s)	97, 1093
PctI	GAATGC	2 cut(s)	880, 1168
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	6 cut(s)	252, 457, 556, 598, 790, 954
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PshAI	GACNNNNGTC	1 cut(s)	508
PsiI	TTATAA	2 cut(s)	278, 647
PspN4I	GGNNCC	1 cut(s)	910
PspPI	GGNCC	1 cut(s)	800
PstI	CTGCAG	2 cut(s)	741, 954
PsuI	RGATCY	1 cut(s)	832
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	32, 983
RsaNI	GTAC	2 cut(s)	31, 982
RseI	CAYNNNNRTG	1 cut(s)	917
SaqAI	TTAA	2 cut(s)	575, 1077
SatI	GCNGC	6 cut(s)	251, 456, 555, 597, 789, 953
Sau3AI	GATC	9 cut(s)	241, 313, 418, 463, 590, 832, 897, 1090, 1183
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	701, 762
SfaNI	GCATC	2 cut(s)	274, 1030
SfcI	CTRYAG	2 cut(s)	737, 950
Sfr274I	CTCGAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	800
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SsiI	CCGC	3 cut(s)	251, 713, 719
SspMI	CTAG	4 cut(s)	42, 62, 387, 551
StyD4I	CCNGG	2 cut(s)	699, 760
TaaI	ACNGT	4 cut(s)	219, 450, 642, 773
TaiI	ACGT	3 cut(s)	522, 968, 1056
TaqI	TCGA	3 cut(s)	373, 924, 1113
TatI	WGTACW	1 cut(s)	981
TauI	GCSGC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	575, 1077
Tru9I	TTAA	2 cut(s)	575, 1077
TscAI	CASTG	3 cut(s)	645, 868, 984
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	5 cut(s)	455, 554, 596, 788, 952
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	279, 319
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	3 cut(s)	645, 868, 984
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	3 cut(s)	204, 229, 704
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	4 cut(s)	42, 62, 387, 551
ZraI	GACGTC	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.