Rroxscaffold_2G00127230
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000706
Physical Location & Seq
Forward (+)
62697947 .. 62699092
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127230.1

Sequence Viewer

Length: 1098 bp
ATGGCCAAGTACCTTTCAGCTAGTATTCTACTTCTTGCGGCTCTAGTTTGTGTATCAGGATTTGCACAAACCAATGGTCATGATACTCACAATGGTATTTGCAAATCTCTTGTGGAGACACGAGGCTATATTTGCGAAGAACATCAAGTAACAACAGAAGATGGTTACATTCTCGGGTTGCAGAGAATTCCATCTGGACGGTTTGGTAGAAATTCGACCACATCTCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTCTAACGGATGCTACATCATGGCTACTCAATCCACCGGACCAGGCTTTGGCCTTCAACTTGGCTGACAAAGGAACGGACTCTAGCCGTGGACACAAATCACTTGCTACTAATGATCCTACCTATTGGGAGTGGACATGGGAACAGTTGGCTGCTTATGATCTTCCTGCTTTGTTAAATTATGTGAACAAGCAAACAGGACAGAGCCCAATTGCTTATCTGGGTCACATATCCAGCCCGCTTTTAAGAGTTGCTACTCAAACATTTTTGCCTGAGCAATTTCACATCTTTGGTCTCCGGGAGTTTCCTCCGCTAGAGCGATTAGAACAAACTCTGCAGACCATTATTTGCATACAACGGGGTGTGGACTGTTCCAACATGATGGCTGCTATAACAGGGCTAGGTCCAAATTGCTGCCTACGTCCTTCAAGTTCATATCTTTACTATAAACATACACCACAATCCACTGCCACAAAGAATATCGTACAATTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCACTCACAAATTTGCAGCACTACAATAAGTTTACCCCTCCAGCGTACAACGTGGCAAATATTCCAAAAGACATTCCTCTTTTCCTCGGCTATGGAGGGAGAGATACACTTTCGGACGTCAACGATATGAAGCTTTTGCTTAATGACATCAAAGATCATGACAAGGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCATATGGATTTCTTTATGGGTTTATGGGTTGGAATGCCAAACATAAAGTTTATGATCCTCTCCTCACTTTCTTCGGGCAACATTGAGAGTCTGACTCCCTAA

Protein Analysis

365

Amino Acids

40.83

Weight (kDa)

6.11

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 3.1e-21 Partial alpha/beta-hydrolase lipase region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 915
AccB7I CCANNNNNTGG 1 cut(s) 304
AciI CCGC 4 cut(s) 38, 233, 494, 566
AclWI GGATC 2 cut(s) 365, 1045
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 186, 211, 805
AcyI GRCGYC 1 cut(s) 912
AfaI GTAC 3 cut(s) 11, 741, 842
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 313, 684
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 20, 928, 967
AluI AGCT 3 cut(s) 20, 928, 967
Alw26I GTCTC 3 cut(s) 110, 554, 753
AlwI GGATC 2 cut(s) 365, 1045
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 3, 306
ApeKI GCWGC 4 cut(s) 407, 641, 669, 811
ApoI RAATTY 3 cut(s) 186, 211, 805
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspS9I GGNCC 2 cut(s) 295, 659
AsuC2I CCSGG 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 295, 659
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 464
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 4 cut(s) 394, 628, 656, 823
BccI CCATC 3 cut(s) 155, 199, 631
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 3 cut(s) 110, 554, 753
BfaI CTAG 5 cut(s) 21, 44, 339, 569, 656
BfmI CTRYAG 1 cut(s) 590
BisI GCNGC 6 cut(s) 39, 233, 408, 642, 670, 812
BlsI GCNGC 6 cut(s) 40, 234, 409, 643, 671, 813
Bme1390I CCNGG 2 cut(s) 299, 554
Bme18I GGWCC 2 cut(s) 295, 659
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 295, 659
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 2 cut(s) 299, 554
BmsI GCATC 1 cut(s) 256
BplI GAGNNNNNCTC 1 cut(s) 1075
BpmI CTGGAG 1 cut(s) 819
Bpu10I CCTNAGC 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 982
BsaHI GRCGYC 1 cut(s) 912
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 343, 880
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 343, 880
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 3 cut(s) 239, 519, 764
BseRI GAGGAG 2 cut(s) 1001, 1048
BseXI GCAGC 4 cut(s) 394, 628, 656, 823
BshFI GGCC 2 cut(s) 5, 308
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 2 cut(s) 293, 553
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 3 cut(s) 110, 554, 753
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 2 cut(s) 5, 308
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 5 cut(s) 370, 415, 756, 949, 1050
BspACI CCGC 4 cut(s) 38, 233, 494, 566
BspANI GGCC 2 cut(s) 5, 308
BspCNI CTCAG 3 cut(s) 238, 520, 763
BspHI TCATGA 2 cut(s) 79, 952
BspLI GGNNCC 1 cut(s) 769
BspMAI CTGCAG 1 cut(s) 594
BspPI GGATC 2 cut(s) 365, 1045
BspTNI GGTCTC 1 cut(s) 554
BssECI CCNNGG 2 cut(s) 343, 880
BssMI GATC 5 cut(s) 370, 415, 756, 949, 1050
BssNI GRCGYC 1 cut(s) 912
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 3 cut(s) 201, 402, 626
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 1 cut(s) 912
BstBAI YACGTR 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 3 cut(s) 225, 528, 750
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 5 cut(s) 373, 418, 759, 952, 1053
BstMAI GTCTC 3 cut(s) 110, 554, 753
BstMBI GATC 5 cut(s) 370, 415, 756, 949, 1050
BstMWI GCNNNNNNNGC 2 cut(s) 132, 253
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 297, 552
BstSFI CTRYAG 1 cut(s) 590
BstSNI TACGTA 1 cut(s) 982
BstV1I GCAGC 4 cut(s) 394, 628, 656, 823
BstXI CCANNNNNNTGG 1 cut(s) 637
BsuRI GGCC 2 cut(s) 5, 308
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 1 cut(s) 720
Cac8I GCNNGC 1 cut(s) 494
CciI TCATGA 2 cut(s) 79, 952
Cfr13I GGNCC 2 cut(s) 295, 659
Csp6I GTAC 3 cut(s) 10, 740, 841
CviAII CATG 6 cut(s) 80, 251, 276, 393, 634, 953
CviQI GTAC 3 cut(s) 10, 740, 841
DdeI CTNAG 3 cut(s) 225, 528, 750
DpnI GATC 5 cut(s) 372, 417, 758, 951, 1052
DpnII GATC 5 cut(s) 370, 415, 756, 949, 1050
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco105I TACGTA 1 cut(s) 982
Eco24I GRGCYC 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 2 cut(s) 295, 659
Eco88I CYCGRG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 464
FaeI CATG 6 cut(s) 83, 254, 279, 396, 637, 956
FatI CATG 6 cut(s) 79, 250, 275, 392, 633, 952
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 999
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 6 cut(s) 39, 233, 408, 642, 670, 812
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 6 cut(s) 39, 233, 408, 642, 670, 812
FspBI CTAG 5 cut(s) 21, 44, 339, 569, 656
GluI GCNGC 6 cut(s) 39, 233, 408, 642, 670, 812
GsuI CTGGAG 1 cut(s) 819
HaeIII GGCC 2 cut(s) 5, 308
HapII CCGG 2 cut(s) 293, 553
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 6 cut(s) 83, 254, 279, 396, 637, 956
HincII GTYRAC 1 cut(s) 916
HindII GTYRAC 1 cut(s) 916
HindIII AAGCTT 2 cut(s) 926, 965
HinfI GANTC 3 cut(s) 335, 1084, 1090
HpaII CCGG 2 cut(s) 293, 553
Hpy166II GTNNAC 6 cut(s) 347, 390, 442, 622, 828, 916
Hpy188I TCNGA 5 cut(s) 228, 753, 761, 910, 1089
Hpy188III TCNNGA 4 cut(s) 57, 80, 195, 953
Hpy8I GTNNAC 6 cut(s) 347, 390, 442, 622, 828, 916
HpyAV CCTTC 2 cut(s) 319, 690
HpyCH4III ACNGT 3 cut(s) 201, 402, 626
HpyCH4IV ACGT 4 cut(s) 676, 846, 912, 981
HpyCH4V TGCA 7 cut(s) 65, 102, 181, 247, 592, 606, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 253
HpyF3I CTNAG 3 cut(s) 225, 528, 750
HpySE526I ACGT 4 cut(s) 676, 846, 912, 981
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 6 cut(s) 83, 254, 279, 396, 637, 956
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 5 cut(s) 370, 415, 756, 949, 1050
Lsp1109I GCAGC 4 cut(s) 394, 628, 656, 823
LweI GCATC 1 cut(s) 256
MaeI CTAG 5 cut(s) 21, 44, 339, 569, 656
MaeII ACGT 4 cut(s) 676, 846, 912, 981
MaeIII GTNAC 3 cut(s) 148, 164, 479
MalI GATC 5 cut(s) 372, 417, 758, 951, 1052
MboI GATC 5 cut(s) 370, 415, 756, 949, 1050
MboII GAAGA 5 cut(s) 149, 170, 410, 785, 1059
MfeI CAATTG 2 cut(s) 465, 743
MhlI GDGCHC 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 186, 211, 433, 465, 533, 664, 743, 805
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 329, 1084, 1093
MmeI TCCRAC 2 cut(s) 654, 1006
MnlI CCTC 9 cut(s) 116, 573, 843, 882, 884, 890, 979, 1064, 1069
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 431, 500, 936
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 293, 553
MspR9I CCNGG 2 cut(s) 299, 554
MunI CAATTG 2 cut(s) 465, 743
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 132, 253
NciI CCSGG 1 cut(s) 554
NdeI CATATG 1 cut(s) 999
NdeII GATC 5 cut(s) 370, 415, 756, 949, 1050
NlaIII CATG 6 cut(s) 83, 254, 279, 396, 637, 956
NlaIV GGNNCC 1 cut(s) 769
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 479
PagI TCATGA 2 cut(s) 79, 952
PctI GAATGC 1 cut(s) 1035
PflMI CCANNNNNTGG 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 6 cut(s) 40, 234, 409, 643, 671, 813
PleI GAGTC 3 cut(s) 329, 1084, 1092
PpsI GAGTC 3 cut(s) 329, 1084, 1092
Ppu21I YACGTR 1 cut(s) 982
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 2 cut(s) 295, 659
PstI CTGCAG 1 cut(s) 594
RsaI GTAC 3 cut(s) 11, 741, 842
RsaNI GTAC 3 cut(s) 10, 740, 841
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 3 cut(s) 431, 500, 936
SatI GCNGC 6 cut(s) 39, 233, 408, 642, 670, 812
Sau3AI GATC 5 cut(s) 370, 415, 756, 949, 1050
Sau96I GGNCC 2 cut(s) 295, 659
SchI GAGTC 3 cut(s) 329, 1084, 1093
ScrFI CCNGG 2 cut(s) 299, 554
SduI GDGCHC 1 cut(s) 464
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 590
SinI GGWCC 2 cut(s) 295, 659
SmiMI CAYNNNNRTG 1 cut(s) 776
SnaBI TACGTA 1 cut(s) 982
Sse9I AATT 8 cut(s) 186, 211, 433, 465, 533, 664, 743, 805
SsiI CCGC 4 cut(s) 38, 233, 494, 566
SspI AATATT 1 cut(s) 856
SspMI CTAG 5 cut(s) 21, 44, 339, 569, 656
StyD4I CCNGG 2 cut(s) 297, 552
TaaI ACNGT 3 cut(s) 201, 402, 626
TaiI ACGT 4 cut(s) 679, 849, 915, 984
TaqI TCGA 2 cut(s) 215, 783
TasI AATT 8 cut(s) 186, 211, 433, 465, 533, 664, 743, 805
TauI GCSGC 2 cut(s) 41, 235
Tru1I TTAA 3 cut(s) 431, 500, 936
Tru9I TTAA 3 cut(s) 431, 500, 936
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 4 cut(s) 407, 641, 669, 811
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 678, 938
TspGWI ACGGA 2 cut(s) 278, 347
TspRI CASTG 1 cut(s) 727
Van91I CCANNNNNTGG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 295, 659
XapI RAATTY 3 cut(s) 186, 211, 805
XspI CTAG 5 cut(s) 21, 44, 339, 569, 656
ZraI GACGTC 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.