Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Forward (+)

13319201 .. 13319674

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCAAGTACCCTTCAGCTAGAGTCGCACAAACCAATGGTCTTGATATTTATAATGGTATTTGCAAATCTCTAGTGGAGACACGAGGCTATATTTGCCAAGAACATCACGTAACAACCGAAGATGGTTACATTCTTGGGTTGCTAAGAATTCCATATGGACGGTCTGGTAGCAAATCGATCACGGATCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTCTAACGGATGCGGCATCATGGCTACTCAATCCACCGGATCAAACTTTGACGTTCATCTTGGCTGACAAAGGGTTTGATTTATGGCTTGCTAATGCTCGAGGAACGGACTCTAGCCGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

6.81

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	24 - 84	1e-20	Partial alpha/beta-hydrolase lipase region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AciI	CCGC	2 cut(s)	197, 233
AclWI	GGATC	2 cut(s)	195, 267
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	11
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	195, 267
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	150
ArsI	GACNNNNNNTTYG	4 cut(s)	25, 57, 278, 310
AvaI	CYCGRG	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	84
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	4 cut(s)	21, 74, 333, 343
BisI	GCNGC	2 cut(s)	197, 234
BlsI	GCNGC	2 cut(s)	198, 235
BmeT110I	CYCGRG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	220, 245
Bsa29I	ATCGAT	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	179
BseGI	GGATG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	180, 187, 259
BspACI	CCGC	2 cut(s)	197, 233
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	179
BspPI	GGATC	2 cut(s)	195, 267
BssMI	GATC	3 cut(s)	180, 187, 259
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	183, 190, 262
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	180, 187, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 96, 217
Bsu15I	ATCGAT	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	309
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	215, 240
CviJI	RGCY	9 cut(s)	5, 20, 90, 196, 220, 244, 284, 307, 336
CviKI_1	RGCY	9 cut(s)	5, 20, 90, 196, 220, 244, 284, 307, 336
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	3 cut(s)	182, 189, 261
DpnII	GATC	3 cut(s)	180, 187, 259
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	218, 243
FaiI	YATR	7 cut(s)	54, 93, 157, 159, 216, 241, 304
FatI	CATG	2 cut(s)	214, 239
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	197, 234
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	197, 234
FspBI	CTAG	4 cut(s)	21, 74, 333, 343
GluI	GCNGC	2 cut(s)	197, 234
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	218, 243
HinfI	GANTC	2 cut(s)	24, 329
HpaII	CCGG	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4IV	ACGT	2 cut(s)	111, 272
HpyCH4V	TGCA	2 cut(s)	66, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 96, 217
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	111, 272
Hsp92II	CATG	2 cut(s)	218, 243
Kzo9I	GATC	3 cut(s)	180, 187, 259
LpnPI	CCDG	3 cut(s)	153, 213, 270
LweI	GCATC	2 cut(s)	220, 245
MaeI	CTAG	4 cut(s)	21, 74, 333, 343
MaeII	ACGT	2 cut(s)	111, 272
MaeIII	GTNAC	2 cut(s)	112, 128
MalI	GATC	3 cut(s)	182, 189, 261
MboI	GATC	3 cut(s)	180, 187, 259
MboII	GAAGA	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	33, 323
MnlI	CCTC	2 cut(s)	80, 314
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	26, 96, 217
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	180, 187, 259
NlaIII	CATG	2 cut(s)	218, 243
PaeR7I	CTCGAG	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	198, 235
PleI	GAGTC	2 cut(s)	32, 323
PpsI	GAGTC	2 cut(s)	32, 323
Ppu21I	YACGTR	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	54
PspXI	VCTCGAGB	1 cut(s)	318
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	2 cut(s)	197, 234
Sau3AI	GATC	3 cut(s)	180, 187, 259
SchI	GAGTC	2 cut(s)	33, 323
SetI	ASST	3 cut(s)	22, 114, 275
SfaNI	GCATC	2 cut(s)	220, 245
Sfr274I	CTCGAG	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	197, 233
SspMI	CTAG	4 cut(s)	21, 74, 333, 343
TaaI	ACNGT	1 cut(s)	165
TaiI	ACGT	2 cut(s)	114, 275
TaqI	TCGA	2 cut(s)	179, 319
TasI	AATT	1 cut(s)	150
TauI	GCSGC	2 cut(s)	199, 236
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	3 cut(s)	200, 242, 341
XapI	RAATTY	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	318
XspI	CTAG	4 cut(s)	21, 74, 333, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.