Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Reverse (-)

9540757 .. 9541353

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG064700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCCAAGTACCCTTCAGCTAGTATTCTACTTCTTGTGGCTCTAGTTTGTGTTTCAGGAGTTGCACAAATCAATGGTCTTGATATTCACAATAGTATTTGCAAAACTCTGGTGGAGACACGAGGCTATATTTGTCAAGAGCATCACGTAACAACAGAAGACGGATACATTCTCGGGTTGCTAAGAATTCCACATGGACGGTCTGGTAGCAAATCGACCAGGGATCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTCTAGCGGATGCAGCATCATGGCTACTCAATCCACAGGATCAGGCTTTAGCGTTCATCTTGTCTGACAAGGGGTATGATGTATGGCTTGCTAATACTCGAGGAACGGACTCTAGCCGTGGACACAAATCACTTATTACTAAGGATCCTGCTTATTGGGACTGGACATGGGAACAGCTGGCTGCTTATGATCTTCCAGCCTTGTTCAATTATGTGAACAACCAAATAGGACAGAAGTCACACTATGTTGGTCATTATTCATTGGGAACGTCGACAATACTAGCTGCCTTGTCCCAACAAAAGCTGAGAAACTCACTAAGATCAGCAGCTTTGCTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

198

Amino Acids

21.8

Weight (kDa)

8.41

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	36 - 96	4.4e-21	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	78 - 197	4.4e-09	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	2 cut(s)	233, 263
AclWI	GGATC	4 cut(s)	231, 303, 395, 408
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	186
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	20, 433, 539, 559, 584, 594
AluI	AGCT	6 cut(s)	20, 433, 539, 559, 584, 594
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	4 cut(s)	231, 303, 395, 408
Ama87I	CYCGRG	2 cut(s)	173, 354
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	269, 437, 539, 581
ApoI	RAATTY	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AvaI	CYCGRG	2 cut(s)	173, 354
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	281, 424, 526, 593
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	6 cut(s)	21, 44, 260, 369, 536, 595
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	233, 270, 438, 540, 582
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	5 cut(s)	234, 271, 439, 541, 583
Bme1390I	CCNGG	1 cut(s)	220
BmeT110I	CYCGRG	2 cut(s)	173, 354
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	151, 256, 281
BoxI	GACNNNNGTC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	219, 373
Bse1I	ACTGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	219, 373
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	281, 424, 526, 593
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	173, 354
BslFI	GGGAC	2 cut(s)	428, 532
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	428, 532
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	173, 354
Bsp143I	GATC	5 cut(s)	223, 295, 400, 445, 575
Bsp1720I	GCTNAGC	1 cut(s)	590
BspACI	CCGC	2 cut(s)	233, 263
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	4 cut(s)	231, 303, 395, 408
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	219, 373
BssMI	GATC	5 cut(s)	223, 295, 400, 445, 575
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	345, 435
BstDEI	CTNAG	5 cut(s)	182, 396, 560, 572, 590
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	226, 298, 403, 448, 578
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	223, 295, 400, 445, 575
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 269
BstNI	CCWGG	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	281, 424, 526, 593
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	345, 435
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	194, 251, 276, 423
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	5 cut(s)	182, 396, 560, 572, 590
DpnI	GATC	5 cut(s)	225, 297, 402, 447, 577
DpnII	GATC	5 cut(s)	223, 295, 400, 445, 575
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	2 cut(s)	173, 354
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	197, 254, 279, 426
FaqI	GGGAC	2 cut(s)	428, 532
FatI	CATG	4 cut(s)	193, 250, 275, 422
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	5 cut(s)	233, 270, 438, 540, 582
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	5 cut(s)	233, 270, 438, 540, 582
FspBI	CTAG	6 cut(s)	21, 44, 260, 369, 536, 595
GluI	GCNGC	5 cut(s)	233, 270, 438, 540, 582
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	197, 254, 279, 426
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	377, 472, 528
Hpy188I	TCNGA	2 cut(s)	228, 322
Hpy188III	TCNNGA	3 cut(s)	57, 80, 137
Hpy8I	GTNNAC	3 cut(s)	377, 472, 528
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	2 cut(s)	147, 524
HpyCH4V	TGCA	4 cut(s)	65, 102, 247, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 269
HpyF3I	CTNAG	5 cut(s)	182, 396, 560, 572, 590
HpySE526I	ACGT	2 cut(s)	147, 524
Hsp92II	CATG	4 cut(s)	197, 254, 279, 426
Kzo9I	GATC	5 cut(s)	223, 295, 400, 445, 575
Lsp1109I	GCAGC	4 cut(s)	281, 424, 526, 593
LweI	GCATC	3 cut(s)	151, 256, 281
MaeI	CTAG	6 cut(s)	21, 44, 260, 369, 536, 595
MaeII	ACGT	2 cut(s)	147, 524
MaeIII	GTNAC	2 cut(s)	148, 492
MalI	GATC	5 cut(s)	225, 297, 402, 447, 577
MboI	GATC	5 cut(s)	223, 295, 400, 445, 575
MboII	GAAGA	2 cut(s)	170, 440
MflI	RGATCY	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	186, 463
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	2 cut(s)	116, 350
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	253, 269
NdeII	GATC	5 cut(s)	223, 295, 400, 445, 575
NlaIII	CATG	4 cut(s)	197, 254, 279, 426
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	492
PaeR7I	CTCGAG	1 cut(s)	354
PkrI	GCNGC	5 cut(s)	234, 271, 439, 541, 583
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	148
PshAI	GACNNNNGTC	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	402
PspXI	VCTCGAGB	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	526
SatI	GCNGC	5 cut(s)	233, 270, 438, 540, 582
Sau3AI	GATC	5 cut(s)	223, 295, 400, 445, 575
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	8 cut(s)	22, 150, 435, 527, 541, 561, 586, 596
SfaNI	GCATC	3 cut(s)	151, 256, 281
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	186, 463
SsiI	CCGC	2 cut(s)	233, 263
SspMI	CTAG	6 cut(s)	21, 44, 260, 369, 536, 595
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	2 cut(s)	150, 527
TaqI	TCGA	3 cut(s)	215, 355, 527
TasI	AATT	2 cut(s)	186, 463
TauI	GCSGC	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	4 cut(s)	269, 437, 539, 581
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	2 cut(s)	301, 504
TspGWI	ACGGA	2 cut(s)	177, 377
XapI	RAATTY	1 cut(s)	186
XhoI	CTCGAG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	6 cut(s)	21, 44, 260, 369, 536, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.