RchiOBHm_Chr6g0253931
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000706
Physical Location & Seq
Reverse (-)
9056962 .. 9058117
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22773

Sequence Viewer

Length: 1104 bp
ATGGCCAAGTACCCTTCAGCTAGTATTCTACTTCTTGTGGCTCTAGTTTGTGTTTCAGGAGTTGCACAAATCAATGGTCTTGATATTCACAATAGTATTTGCAAAACTCTGGTGGAGACACGAGGCTATATTTGTCAAGAGCATCACGTAACAACAGAAGACGGATACATTCTCGGGTTGCTAAGAATTCCACATGGACGGTCTGGTAGCAAATCGACCAGGGATCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTCTAGCGGATGCAGCATCATGGCTACTCAATCCACAGGATCAGGCTTTAGCGTTCATCTTGTCTGACAAGGGGTATGATGTATGGCTTGCTAATACTCGAGGAACGGACTCTAGCCGTGGACACAAATCACTTATTACTAAGGATCCTGCTTATTGGGACTGGACATGGGAACAGCTGGCTGCTTATGATCTTCCAGCCTTGTTCAATTATGTGAACAACCAAATAGGACAGAAGTCACACTATGTTGGTCATTATTCATTGGGAACGTTGACAATACTAGCTGCCTTCCCAATTGCTCATCTGGGTCAAATATCCACAACGCTTTTAAGAGTTGCTACTCAAACATTTTTGGCTGAGCAATTCTACATCTTTGGTCTTCGGGAATTTCCTCCTCTAGGGCGATTAGAACAAACTCTGCAGACAATTCTTTGCATACATCCTGGCGTGGACTGCTCTTACATTTTGACTGCTATAACAGGTCCAAATTGTTGTCTAAGTCCTTCAAGTTTAGATCTTCTCTATGAGCATACACCACAATCCACTTCCACAAAGAATATAGTACATTTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCGCTAAAAAATTTGCAGCACTACAATCGGTTTACTCCTCCGGTGTACAACATGGCAAACATTCCAAAAGATATTCCTCTTTTCCTCGGTTATGGAGGGAGAGATGCACTTTCAGACGTCAATGATGTGAAAGCTTTGCTTTACGATCTCAAAGATCATGACAAGGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCATATGGATTATGGGTTGGAATGCCAATAG

Protein Analysis

367

Amino Acids

41.1

Weight (kDa)

6.08

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 1.3e-20 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 78 - 182 1.8e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 993
AciI CCGC 3 cut(s) 233, 263, 875
AclI AACGTT 1 cut(s) 524
AclWI GGATC 4 cut(s) 231, 303, 395, 408
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 186, 641, 883
AcyI GRCGYC 1 cut(s) 990
AfaI GTAC 3 cut(s) 11, 819, 920
AfiI CCNNNNNNNGG 1 cut(s) 653
AgsI TTSAA 2 cut(s) 463, 762
AjnI CCWGG 2 cut(s) 218, 697
AluBI AGCT 5 cut(s) 20, 433, 539, 1007, 1045
AluI AGCT 5 cut(s) 20, 433, 539, 1007, 1045
Alw26I GTCTC 2 cut(s) 110, 831
AlwI GGATC 4 cut(s) 231, 303, 395, 408
Ama87I CYCGRG 2 cut(s) 173, 354
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 269, 437, 539, 889
ApoI RAATTY 3 cut(s) 186, 641, 883
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspS9I GGNCC 1 cut(s) 737
AvaI CYCGRG 2 cut(s) 173, 354
AvaII GGWCC 1 cut(s) 737
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 400
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 165, 626
BbvI GCAGC 4 cut(s) 281, 424, 526, 901
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciT130I CCWGG 2 cut(s) 220, 699
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 110, 831
BfaI CTAG 6 cut(s) 21, 44, 260, 369, 536, 653
BfmI CTRYAG 1 cut(s) 674
BfuI GTATCC 1 cut(s) 158
BglII AGATCT 1 cut(s) 769
BisI GCNGC 5 cut(s) 233, 270, 438, 540, 890
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 5 cut(s) 234, 271, 439, 541, 891
Bme1390I CCNGG 2 cut(s) 220, 699
Bme18I GGWCC 1 cut(s) 737
BmeT110I CYCGRG 2 cut(s) 173, 354
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 402, 847
BmrFI CCNGG 2 cut(s) 220, 699
BmsI GCATC 4 cut(s) 151, 256, 281, 967
BoxI GACNNNNGTC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 165, 626
Bpu1102I GCTNAGC 1 cut(s) 612
BsaAI YACGTR 2 cut(s) 148, 1060
BsaHI GRCGYC 1 cut(s) 990
BsaJI CCNNGG 3 cut(s) 219, 373, 958
BsaWI WCCGGW 1 cut(s) 913
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 220, 699
BseDI CCNNGG 3 cut(s) 219, 373, 958
BseGI GGATG 2 cut(s) 271, 694
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMII CTCAG 2 cut(s) 603, 842
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 3 cut(s) 639, 900, 1079
BseXI GCAGC 4 cut(s) 281, 424, 526, 901
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 2 cut(s) 173, 354
BsiSI CCGG 1 cut(s) 914
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 2 cut(s) 110, 831
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 1100
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 173, 354
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 3 cut(s) 233, 263, 875
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 604, 841
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 2 cut(s) 402, 847
BspMAI CTGCAG 1 cut(s) 678
BspPI GGATC 4 cut(s) 231, 303, 395, 408
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 219, 373, 958
BssMI GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
BssNI GRCGYC 1 cut(s) 990
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 220, 699
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 1 cut(s) 990
BstAUI TGTACA 1 cut(s) 918
BstBAI YACGTR 2 cut(s) 148, 1060
BstC8I GCNNGC 2 cut(s) 345, 435
BstDEI CTNAG 5 cut(s) 182, 396, 612, 752, 828
BstDSI CCRYGG 1 cut(s) 373
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 271, 694
BstKTI GATC 8 cut(s) 226, 298, 403, 448, 772, 837, 1021, 1030
BstMAI GTCTC 2 cut(s) 110, 831
BstMBI GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 253, 269, 708
BstNI CCWGG 2 cut(s) 220, 699
BstPAI GACNNNNGTC 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 218, 697
BstSFI CTRYAG 1 cut(s) 674
BstSNI TACGTA 1 cut(s) 1060
BstV1I GCAGC 4 cut(s) 281, 424, 526, 901
BstV2I GAAGAC 2 cut(s) 165, 626
BstX2I RGATCY 2 cut(s) 400, 769
BstYI RGATCY 2 cut(s) 400, 769
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 2 cut(s) 271, 694
Cac8I GCNNGC 2 cut(s) 345, 435
CciI TCATGA 1 cut(s) 1030
Cfr13I GGNCC 1 cut(s) 737
Csp6I GTAC 3 cut(s) 10, 818, 919
CviAII CATG 6 cut(s) 194, 251, 276, 423, 925, 1031
CviQI GTAC 3 cut(s) 10, 818, 919
DdeI CTNAG 5 cut(s) 182, 396, 612, 752, 828
DpnI GATC 8 cut(s) 225, 297, 402, 447, 771, 836, 1020, 1029
DpnII GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Eco105I TACGTA 1 cut(s) 1060
Eco47I GGWCC 1 cut(s) 737
Eco88I CYCGRG 2 cut(s) 173, 354
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 218, 697
FaeI CATG 6 cut(s) 197, 254, 279, 426, 928, 1034
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FaqI GGGAC 1 cut(s) 428
FatI CATG 6 cut(s) 193, 250, 275, 422, 924, 1030
FauNDI CATATG 1 cut(s) 1077
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 5 cut(s) 233, 270, 438, 540, 890
FokI GGATG 2 cut(s) 278, 681
Fsp4HI GCNGC 5 cut(s) 233, 270, 438, 540, 890
FspBI CTAG 6 cut(s) 21, 44, 260, 369, 536, 653
GluI GCNGC 5 cut(s) 233, 270, 438, 540, 890
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 914
Hin1I GRCGYC 1 cut(s) 990
Hin1II CATG 6 cut(s) 197, 254, 279, 426, 928, 1034
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HindIII AAGCTT 2 cut(s) 1005, 1043
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 914
Hpy166II GTNNAC 6 cut(s) 377, 472, 528, 706, 906, 919
Hpy188I TCNGA 5 cut(s) 228, 322, 831, 839, 988
Hpy188III TCNNGA 5 cut(s) 57, 80, 137, 638, 1031
Hpy8I GTNNAC 6 cut(s) 377, 472, 528, 706, 906, 919
HpyAV CCTTC 3 cut(s) 24, 553, 768
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 4 cut(s) 147, 524, 990, 1059
HpyCH4V TGCA 8 cut(s) 65, 102, 247, 269, 676, 690, 889, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 269, 708
HpyF3I CTNAG 5 cut(s) 182, 396, 612, 752, 828
HpySE526I ACGT 4 cut(s) 147, 524, 990, 1059
Hsp92I GRCGYC 1 cut(s) 990
Hsp92II CATG 6 cut(s) 197, 254, 279, 426, 928, 1034
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
Lsp1109I GCAGC 4 cut(s) 281, 424, 526, 901
LweI GCATC 4 cut(s) 151, 256, 281, 967
MaeI CTAG 6 cut(s) 21, 44, 260, 369, 536, 653
MaeII ACGT 4 cut(s) 147, 524, 990, 1059
MaeIII GTNAC 2 cut(s) 148, 492
MalI GATC 8 cut(s) 225, 297, 402, 447, 771, 836, 1020, 1029
MboI GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
MboII GAAGA 5 cut(s) 170, 440, 626, 764, 863
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 2 cut(s) 400, 769
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 186, 463, 549, 617, 641, 681, 742, 883
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 1071
MnlI CCTC 9 cut(s) 116, 350, 657, 660, 921, 960, 962, 968, 1057
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 854
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 433
MspI CCGG 1 cut(s) 914
MspR9I CCNGG 2 cut(s) 220, 699
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 1100
MvaI CCWGG 2 cut(s) 220, 699
MwoI GCNNNNNNNGC 3 cut(s) 253, 269, 708
NdeI CATATG 1 cut(s) 1077
NdeII GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
NlaIII CATG 6 cut(s) 197, 254, 279, 426, 928, 1034
NlaIV GGNNCC 2 cut(s) 402, 847
NmuCI GTSAC 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 1030
PctI GAATGC 1 cut(s) 1100
PkrI GCNGC 5 cut(s) 234, 271, 439, 541, 891
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 2 cut(s) 148, 1060
PshAI GACNNNNGTC 1 cut(s) 490
Psp1406I AACGTT 1 cut(s) 524
Psp6I CCWGG 2 cut(s) 218, 697
PspGI CCWGG 2 cut(s) 218, 697
PspN4I GGNNCC 2 cut(s) 402, 847
PspPI GGNCC 1 cut(s) 737
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 678
PsuI RGATCY 2 cut(s) 400, 769
PvuII CAGCTG 1 cut(s) 433
RsaI GTAC 3 cut(s) 11, 819, 920
RsaNI GTAC 3 cut(s) 10, 818, 919
RseI CAYNNNNRTG 1 cut(s) 854
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 5 cut(s) 233, 270, 438, 540, 890
Sau3AI GATC 8 cut(s) 223, 295, 400, 445, 769, 834, 1018, 1027
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 220, 699
SfaNI GCATC 4 cut(s) 151, 256, 281, 967
SfcI CTRYAG 1 cut(s) 674
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 737
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SnaBI TACGTA 1 cut(s) 1060
Sse9I AATT 8 cut(s) 186, 463, 549, 617, 641, 681, 742, 883
SsiI CCGC 3 cut(s) 233, 263, 875
SspMI CTAG 6 cut(s) 21, 44, 260, 369, 536, 653
StyD4I CCNGG 2 cut(s) 218, 697
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 4 cut(s) 150, 527, 993, 1062
TaqI TCGA 3 cut(s) 215, 355, 861
TasI AATT 8 cut(s) 186, 463, 549, 617, 641, 681, 742, 883
TatI WGTACW 2 cut(s) 817, 918
TauI GCSGC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 4 cut(s) 269, 437, 539, 889
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 2 cut(s) 301, 504
TspGWI ACGGA 2 cut(s) 177, 377
VpaK11BI GGWCC 1 cut(s) 737
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 3 cut(s) 186, 641, 883
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 6 cut(s) 21, 44, 260, 369, 536, 653
ZraI GACGTC 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.