Rroxscaffold_2G00091900
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000706
Physical Location & Seq
Forward (+)
13440292 .. 13442364
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091900.1

Sequence Viewer

Length: 792 bp
ATGGCCAAGTACCCTTCAAACCTCTCTGCTTCTTGTGGCTCTACTTTGTACTTTTTGCAGCTGCAGGAATCAACAGTCTTGATCAAAATGGATGCTGCAGCATGGCTAATCAATCCTCCCGATCAAGCTTTGGCGTTTATCTTAGCCGACAAGGGGTTTGATGTATGGCTTGCTAATGCTCGAGGAACGCAGGCTAGCCGTGGACACCAATCACTTAGTACTAATGATCCGAATCTGATCTGTTTCATTCAACGGGACTCTACGCCTCTCGGTATCCGCGAATATCCTCCTCAAGGGGTAGCTGGACAGAACTTGGAGACATTTCTCTGCTCACAACCGGGTGTCGACTGCTCCAATTTTATGGCGGCTGTAACCGGTCCTAATTGCTGCATAACTCCAACAAGTTCAAATCTTATCTTTCAGCATATACCACAGTCCACTTCCACAAAAAATATGGTACATTTGTCTGAAATGATCAGGAGAGGAACAATAACAATGTTTGATTACAATCTTCCGGCCATTAACATGCAACACTACAATCAGCTTACTCCTCCGGTGTACAACATGGCAAGCATTCCGAAAGACGTTCCTCTTTTCTTTGGCTATGGAGGGAGAGATGCACTTTCGGACGTCAATGATGTGAAGGCTTTGCTTAATGACCTTAGTGATCATGATAAGGACAAGCTTGTGGAACAATACGTGGAAGAGTATGCTCATATGGATTTCATTATGGGTGGGAATGCCAATCAAAAAGTCTACGATCCTCTGCTCACTTTCTTCGGGCAACATTGA

Protein Analysis

263

Amino Acids

29.12

Weight (kDa)

5.09

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 633
AccI GTMKAC 2 cut(s) 345, 756
AccII CGCG 1 cut(s) 279
AciI CCGC 2 cut(s) 277, 365
AclWI GGATC 2 cut(s) 221, 755
AcoI YGGCCR 2 cut(s) 3, 516
AcyI GRCGYC 1 cut(s) 630
AfaI GTAC 5 cut(s) 11, 50, 220, 459, 560
AfiI CCNNNNNNNGG 2 cut(s) 153, 293
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 3 cut(s) 18, 251, 408
AluBI AGCT 5 cut(s) 61, 128, 302, 544, 685
AluI AGCT 5 cut(s) 61, 128, 302, 544, 685
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 221, 755
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 2 cut(s) 3, 516
ApeKI GCWGC 5 cut(s) 58, 61, 95, 98, 387
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsiGI ACCGGT 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 339
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 5 cut(s) 48, 70, 82, 110, 374
BceAI ACGGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 284
BclI TGATCA 3 cut(s) 81, 474, 667
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 62, 96
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 6 cut(s) 59, 62, 96, 99, 366, 388
BlsI GCNGC 6 cut(s) 60, 63, 97, 100, 367, 389
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 82, 607
BmtI GCTAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 700
BsaBI GATNNNNATC 2 cut(s) 231, 507
BsaHI GRCGYC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 2 cut(s) 374, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 293
Bse118I RCCGGY 1 cut(s) 374
Bse8I GATNNNNATC 2 cut(s) 231, 507
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 2 cut(s) 231, 507
BseLI CCNNNNNNNGG 2 cut(s) 153, 293
BseRI GAGGAG 2 cut(s) 279, 540
BseXI GCAGC 5 cut(s) 48, 70, 82, 110, 374
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 5, 518
BshTI ACCGGT 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 4 cut(s) 338, 375, 515, 554
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 153, 293
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 573, 745
BsnI GGCC 2 cut(s) 5, 518
BsoBI CYCGRG 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
BspACI CCGC 2 cut(s) 277, 365
BspANI GGCC 2 cut(s) 5, 518
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 670
BspMAI CTGCAG 2 cut(s) 66, 100
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 221, 755
BsrFI RCCGGY 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 558
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
BssNI GRCGYC 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 76, 435
Bst6I CTCTTC 1 cut(s) 699
BstACI GRCGYC 1 cut(s) 630
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 700
BstC8I GCNNGC 4 cut(s) 171, 192, 196, 571
BstDEI CTNAG 3 cut(s) 142, 215, 662
BstDSI CCRYGG 1 cut(s) 199
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 7 cut(s) 84, 124, 229, 240, 477, 670, 763
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 2 cut(s) 62, 96
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 5 cut(s) 48, 70, 82, 110, 374
BstXI CCANNNNNNTGG 1 cut(s) 361
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 2 cut(s) 5, 518
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 4 cut(s) 171, 192, 196, 571
CciI TCATGA 1 cut(s) 670
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 5 cut(s) 10, 49, 219, 458, 559
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 4 cut(s) 102, 526, 565, 671
CviQI GTAC 5 cut(s) 10, 49, 219, 458, 559
DdeI CTNAG 3 cut(s) 142, 215, 662
DpnI GATC 7 cut(s) 83, 123, 228, 239, 476, 669, 762
DpnII GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
EaeI YGGCCR 2 cut(s) 3, 516
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 291
FaeI CATG 4 cut(s) 105, 529, 568, 674
FaqI GGGAC 1 cut(s) 269
FatI CATG 4 cut(s) 101, 525, 564, 670
FauNDI CATATG 1 cut(s) 717
FbaI TGATCA 3 cut(s) 81, 474, 667
FblI GTMKAC 2 cut(s) 345, 756
Fnu4HI GCNGC 6 cut(s) 59, 62, 96, 99, 366, 388
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 6 cut(s) 59, 62, 96, 99, 366, 388
FspBI CTAG 1 cut(s) 195
GluI GCNGC 6 cut(s) 59, 62, 96, 99, 366, 388
HaeIII GGCC 2 cut(s) 5, 518
HapII CCGG 4 cut(s) 338, 375, 515, 554
Hin1I GRCGYC 1 cut(s) 630
Hin1II CATG 4 cut(s) 105, 529, 568, 674
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 126, 683
HinfI GANTC 3 cut(s) 68, 232, 257
HpaII CCGG 4 cut(s) 338, 375, 515, 554
Hpy166II GTNNAC 5 cut(s) 203, 346, 438, 559, 757
Hpy188I TCNGA 5 cut(s) 231, 237, 469, 579, 628
Hpy188III TCNNGA 4 cut(s) 79, 119, 478, 671
Hpy8I GTNNAC 5 cut(s) 203, 346, 438, 559, 757
HpyAV CCTTC 2 cut(s) 24, 637
HpyCH4III ACNGT 2 cut(s) 76, 435
HpyCH4IV ACGT 3 cut(s) 585, 630, 699
HpyCH4V TGCA 6 cut(s) 58, 64, 98, 390, 529, 620
HpyF3I CTNAG 3 cut(s) 142, 215, 662
HpySE526I ACGT 3 cut(s) 585, 630, 699
Hsp92I GRCGYC 1 cut(s) 630
Hsp92II CATG 4 cut(s) 105, 529, 568, 674
Ksp22I TGATCA 3 cut(s) 81, 474, 667
Kzo9I GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 50, 176, 288, 351, 388, 463, 528, 567
Lsp1109I GCAGC 5 cut(s) 48, 70, 82, 110, 374
LweI GCATC 2 cut(s) 82, 607
MaeI CTAG 1 cut(s) 195
MaeII ACGT 3 cut(s) 585, 630, 699
MaeIII GTNAC 1 cut(s) 370
MalI GATC 7 cut(s) 83, 123, 228, 239, 476, 669, 762
MboI GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
MboII GAAGA 3 cut(s) 503, 716, 769
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 355, 382
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 422
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 522, 654
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 4 cut(s) 338, 375, 515, 554
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 573, 745
MvnI CGCG 1 cut(s) 279
NciI CCSGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 717
NdeII GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 4 cut(s) 105, 529, 568, 674
NspI RCATGY 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 180
PagI TCATGA 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 2 cut(s) 573, 745
PfeI GAWTC 2 cut(s) 68, 232
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 6 cut(s) 60, 63, 97, 100, 367, 389
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 700
PspPI GGNCC 1 cut(s) 377
PspXI VCTCGAGB 1 cut(s) 180
PstI CTGCAG 2 cut(s) 66, 100
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 5 cut(s) 11, 50, 220, 459, 560
RsaNI GTAC 5 cut(s) 10, 49, 219, 458, 559
RseI CAYNNNNRTG 1 cut(s) 524
SalI GTCGAC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 522, 654
SatI GCNGC 6 cut(s) 59, 62, 96, 99, 366, 388
Sau3AI GATC 7 cut(s) 81, 121, 226, 237, 474, 667, 760
Sau96I GGNCC 1 cut(s) 377
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 339
SfaNI GCATC 2 cut(s) 82, 607
SfcI CTRYAG 2 cut(s) 62, 96
Sfr274I CTCGAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 180, 291
SmoI CTYRAG 2 cut(s) 180, 291
Sse9I AATT 2 cut(s) 355, 382
SsiI CCGC 2 cut(s) 277, 365
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 76, 435
TaiI ACGT 3 cut(s) 588, 633, 702
TaqI TCGA 2 cut(s) 181, 345
TasI AATT 2 cut(s) 355, 382
TatI WGTACW 3 cut(s) 48, 218, 558
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 2 cut(s) 68, 232
Tru1I TTAA 2 cut(s) 522, 654
Tru9I TTAA 2 cut(s) 522, 654
TseI GCWGC 5 cut(s) 58, 61, 95, 98, 387
TspDTI ATGAA 2 cut(s) 235, 715
VpaK11BI GGWCC 1 cut(s) 377
XagI CCTNNNNNAGG 1 cut(s) 291
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XhoI CTCGAG 1 cut(s) 180
XmiI GTMKAC 2 cut(s) 345, 756
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 631
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.