Rmu_sc0004473.1_g000004
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004473.1
Physical Location & Seq
Reverse (-)
21525 .. 25727
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004473.1_g000004.1.cds

Sequence Viewer

Length: 1623 bp
atggtcaagtttaatagtatttgtattgtgatttcttcaaaccctctgcttcttgtggctctactttgtgcttttgcagctgcaggaatcaacagtcttgatcaaaatggtatttgcaaatcattggtggagacacaaggctatacttgccaagaccatcaagtaacgacagaagatggttacatcctcggattgcagaggattccatctggacgttccagtaacaattcgaccgctcagaagctgcctgttttattacaacatggacttacgatggatgctgcagcatggctaatcaatcctccagatcaagctttggcgtttatcttagccgacaaggggtttgatgtatggcttgctaatgctcgaggaacgcaggctagccgtggacaccaatcacttagtactaatgatccgacttattgggaatggacatgggatcaattggctgcttatgatcttcctgctttctttaattatgtgaacaatcaaacaggacagaaagtacactatgttggccattcactgggaacattgtcagtattagctgccttgtcacaacaaaagctgagtaacacactaagatcagctgctttacttagcccggttgcttatctgggtcagatcaccacaaatctgatccgtttcattcaacagggactttacgcctctggtatccgcgaatatcctcctcaaggggtagctggacagaacttggtgacatttctctgctcacaaccgggtgtggactgctccaattttatggcggctgtaaccggtcctaattgctgcataactccaacaagttcaaatcttatctttcagcatataccacagtccacttccacaaaaaatatggtacatttgtctgaaatgatcaggagaggaacaataacaatgtttgattacaattttccggccattaacatgcaacactacaatcagcttactcctccggtgtacaacatggcaagcattccgaaagacgttcctcttttcttgggctatggagggagagatgcactttcggacgtcaatgatgtgaaggctttgcttaatgaccttagtgatcatgacaaggacaagcttgtggaacaatacgtggaggagtatgctcatatggatttcattatggaggggatcgagatggaagaatgtgttaaacagctctccaacagaatgctggcatcacatgtattttgtgttcttgacatgcttcttatgaatttctttaccgcagaacacatctattttagaatcccaagatccccagccaactgtcaggaaagaaaagaattcaattccaatgttagtaaactgtggatgatcaaaccaaatggcctcaagtttaaagggtctgatgttgaaattctttttgacacaagtactcaagagaatagggccatgatcagaccctacaattggcaaattttcaagttgatagtccggaaaaagttgaagccaagaaggattggcagtcactcgatccaacctttcaaagatcacagtacacgccgccagacgggctacaacctcagcatcggaccacctccagatcgccaccgacgcgctgccacgcgccgcgccgagatggcatcagaagcttctgaagctgggaactga

Protein Analysis

540

Amino Acids

60.38

Weight (kDa)

7.95

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1035
AccB7I CCANNNNNTGG 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 236
AccII CGCG 4 cut(s) 681, 1569, 1579, 1584
AccIII TCCGGA 1 cut(s) 1446
AciI CCGC 6 cut(s) 234, 679, 767, 1236, 1516, 1582
AclWI GGATC 6 cut(s) 407, 447, 634, 1148, 1260, 1480
AcoI YGGCCR 2 cut(s) 517, 918
AcsI RAATTY 4 cut(s) 1225, 1295, 1368, 1428
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 6 cut(s) 406, 507, 861, 962, 1387, 1510
AfiI CCNNNNNNNGG 5 cut(s) 339, 526, 695, 1422, 1522
AflIII ACRYGT 1 cut(s) 1192
AgeI ACCGGT 1 cut(s) 776
AgsI TTSAA 8 cut(s) 39, 653, 810, 1300, 1367, 1435, 1459, 1498
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 6 cut(s) 407, 447, 634, 1148, 1260, 1480
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 366
Aor13HI TCCGGA 1 cut(s) 1446
AoxI GGCC 4 cut(s) 517, 918, 1339, 1401
ApoI RAATTY 4 cut(s) 1225, 1295, 1368, 1428
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AsiGI ACCGGT 1 cut(s) 776
AspLEI GCGC 3 cut(s) 1571, 1581, 1586
AspS9I GGNCC 3 cut(s) 779, 1401, 1544
AsuC2I CCSGG 2 cut(s) 605, 741
AsuHPI GGTGA 2 cut(s) 619, 730
AsuNHI GCTAGC 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 2 cut(s) 779, 1544
BaeI ACNNNNGTAYC 2 cut(s) 851, 884
BalI TGGCCA 1 cut(s) 519
BbvCI CCTCAGC 1 cut(s) 1535
BccI CCATC 6 cut(s) 165, 170, 214, 268, 1141, 1585
BceAI ACGGC 1 cut(s) 369
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 5 cut(s) 100, 876, 1069, 1326, 1407
BcnI CCSGG 2 cut(s) 605, 741
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 81, 282
BfuI GTATCC 1 cut(s) 686
BglI GCCNNNNNGGC 2 cut(s) 1524, 1592
BmcAI AGTACT 2 cut(s) 406, 1387
Bme1390I CCNGG 2 cut(s) 605, 741
Bme18I GGWCC 2 cut(s) 779, 1544
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 3 cut(s) 779, 1401, 1544
BmrFI CCNGG 2 cut(s) 605, 741
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 5 cut(s) 268, 1009, 1196, 1548, 1604
BmtI GCTAGC 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 536
BpmI CTGGAG 2 cut(s) 288, 1536
Bpu10I CCTNAGC 1 cut(s) 1535
BpuEI CTTGAG 3 cut(s) 678, 1328, 1374
BpuMI CCSGG 2 cut(s) 605, 741
BsaAI YACGTR 1 cut(s) 1102
BsaHI GRCGYC 1 cut(s) 1032
BsaJI CCNNGG 2 cut(s) 187, 385
BsaWI WCCGGW 3 cut(s) 776, 955, 1446
Bsc4I CCNNNNNNNGG 5 cut(s) 339, 526, 695, 1422, 1522
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 2 cut(s) 219, 531
BseAI TCCGGA 1 cut(s) 1446
BseDI CCNNGG 2 cut(s) 187, 385
BseGI GGATG 3 cut(s) 183, 283, 1329
BseLI CCNNNNNNNGG 5 cut(s) 339, 526, 695, 1422, 1522
BseMII CTCAG 3 cut(s) 251, 560, 1549
BseNI ACTGG 2 cut(s) 219, 531
BseRI GAGGAG 3 cut(s) 681, 942, 1121
BseYI CCCAGC 2 cut(s) 1270, 1613
Bsh1236I CGCG 4 cut(s) 681, 1569, 1579, 1584
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 4 cut(s) 519, 920, 1341, 1403
BshTI ACCGGT 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 6 cut(s) 605, 740, 777, 917, 956, 1447
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 5 cut(s) 339, 526, 695, 1422, 1522
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 672
BsmI GAATGC 2 cut(s) 975, 1185
BsnI GGCC 4 cut(s) 519, 920, 1341, 1403
BsoBI CYCGRG 1 cut(s) 366
Bsp13I TCCGGA 1 cut(s) 1446
Bsp1407I TGTACA 1 cut(s) 960
BspACI CCGC 6 cut(s) 234, 679, 767, 1236, 1516, 1582
BspANI GGCC 4 cut(s) 519, 920, 1341, 1403
BspCNI CTCAG 3 cut(s) 250, 561, 1548
BspEI TCCGGA 1 cut(s) 1446
BspFNI CGCG 4 cut(s) 681, 1569, 1579, 1584
BspHI TCATGA 1 cut(s) 1072
BspMAI CTGCAG 2 cut(s) 85, 286
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 6 cut(s) 407, 447, 634, 1148, 1260, 1480
BsrBI CCGCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 776
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 2 cut(s) 219, 531
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 2 cut(s) 187, 385
BssNI GRCGYC 1 cut(s) 1032
Bst4CI ACNGT 5 cut(s) 95, 837, 1280, 1320, 1508
BstACI GRCGYC 1 cut(s) 1032
BstAUI TGTACA 1 cut(s) 960
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 5 cut(s) 357, 378, 382, 973, 1185
BstDEI CTNAG 8 cut(s) 237, 328, 401, 569, 581, 599, 1064, 1535
BstDSI CCRYGG 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 3 cut(s) 183, 283, 1329
BstFNI CGCG 4 cut(s) 681, 1569, 1579, 1584
BstHHI GCGC 3 cut(s) 1571, 1581, 1586
BstMAI GTCTC 1 cut(s) 125
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 7 cut(s) 77, 147, 1524, 1566, 1592, 1601, 1610
BstNSI RCATGY 3 cut(s) 931, 1196, 1216
BstSCI CCNGG 2 cut(s) 603, 739
BstSFI CTRYAG 2 cut(s) 81, 282
BstUI CGCG 4 cut(s) 681, 1569, 1579, 1584
BstX2I RGATCY 1 cut(s) 1265
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 1 cut(s) 1265
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 4 cut(s) 519, 920, 1341, 1403
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 3 cut(s) 183, 283, 1329
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 5 cut(s) 357, 378, 382, 973, 1185
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 1072
CfoI GCGC 3 cut(s) 1571, 1581, 1586
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 3 cut(s) 779, 1401, 1544
CseI GACGC 1 cut(s) 1575
Csp6I GTAC 6 cut(s) 405, 506, 860, 961, 1386, 1509
CspAI ACCGGT 1 cut(s) 776
CviAII CATG 9 cut(s) 263, 288, 435, 928, 967, 1073, 1193, 1213, 1405
CviQI GTAC 6 cut(s) 405, 506, 860, 961, 1386, 1509
DdeI CTNAG 8 cut(s) 237, 328, 401, 569, 581, 599, 1064, 1535
DraI TTTAAA 1 cut(s) 1351
EaeI YGGCCR 2 cut(s) 517, 918
Eco47I GGWCC 2 cut(s) 779, 1544
Eco88I CYCGRG 1 cut(s) 366
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 1295
FaeI CATG 9 cut(s) 266, 291, 438, 931, 970, 1076, 1196, 1216, 1408
FaqI GGGAC 1 cut(s) 672
FatI CATG 9 cut(s) 262, 287, 434, 927, 966, 1072, 1192, 1212, 1404
FauNDI CATATG 1 cut(s) 1119
FbaI TGATCA 5 cut(s) 100, 876, 1069, 1326, 1407
FokI GGATG 3 cut(s) 170, 290, 1336
FspBI CTAG 1 cut(s) 381
GlaI GCGC 3 cut(s) 1570, 1580, 1585
GsaI CCCAGC 2 cut(s) 1274, 1617
GsuI CTGGAG 2 cut(s) 288, 1536
HaeIII GGCC 4 cut(s) 519, 920, 1341, 1403
HapII CCGG 6 cut(s) 605, 740, 777, 917, 956, 1447
HgaI GACGC 1 cut(s) 1575
HhaI GCGC 3 cut(s) 1571, 1581, 1586
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 9 cut(s) 266, 291, 438, 931, 970, 1076, 1196, 1216, 1408
Hin6I GCGC 3 cut(s) 1569, 1579, 1584
HinP1I GCGC 3 cut(s) 1569, 1579, 1584
HindIII AAGCTT 3 cut(s) 312, 1085, 1602
HinfI GANTC 3 cut(s) 87, 202, 1257
HpaII CCGG 6 cut(s) 605, 740, 777, 917, 956, 1447
HphI GGTGA 2 cut(s) 619, 730
Hpy166II GTNNAC 8 cut(s) 389, 484, 508, 748, 840, 961, 1316, 1511
Hpy8I GTNNAC 8 cut(s) 389, 484, 508, 748, 840, 961, 1316, 1511
Hpy99I CGWCG 1 cut(s) 1569
HpyAV CCTTC 2 cut(s) 1039, 1461
HpyCH4III ACNGT 5 cut(s) 95, 837, 1280, 1320, 1508
HpyCH4IV ACGT 4 cut(s) 214, 987, 1032, 1101
HpyCH4V TGCA 8 cut(s) 77, 83, 117, 196, 284, 792, 931, 1022
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 147, 1524, 1566, 1592, 1601, 1610
HpyF3I CTNAG 8 cut(s) 237, 328, 401, 569, 581, 599, 1064, 1535
HpySE526I ACGT 4 cut(s) 214, 987, 1032, 1101
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 9 cut(s) 266, 291, 438, 931, 970, 1076, 1196, 1216, 1408
HspAI GCGC 3 cut(s) 1569, 1579, 1584
Kpn2I TCCGGA 1 cut(s) 1446
Ksp22I TGATCA 5 cut(s) 100, 876, 1069, 1326, 1407
LmnI GCTCC 1 cut(s) 758
LweI GCATC 5 cut(s) 268, 1009, 1196, 1548, 1604
MaeI CTAG 1 cut(s) 381
MaeII ACGT 4 cut(s) 214, 987, 1032, 1101
MaeIII GTNAC 8 cut(s) 163, 179, 221, 555, 572, 718, 772, 1478
MbiI CCGCTC 1 cut(s) 236
MboII GAAGA 4 cut(s) 27, 185, 452, 1163
MfeI CAATTG 2 cut(s) 443, 1420
MflI RGATCY 1 cut(s) 1265
MlsI TGGCCA 1 cut(s) 519
MluNI TGGCCA 1 cut(s) 519
MmeI TCCRAC 4 cut(s) 440, 824, 1197, 1513
Mox20I TGGCCA 1 cut(s) 519
MroI TCCGGA 1 cut(s) 1446
MscI TGGCCA 1 cut(s) 519
MseI TTAA 6 cut(s) 12, 474, 924, 1056, 1161, 1350
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 80, 590
MspI CCGG 6 cut(s) 605, 740, 777, 917, 956, 1447
MspR9I CCNGG 2 cut(s) 605, 741
MteI GCGCNGCGC 1 cut(s) 1582
MunI CAATTG 2 cut(s) 443, 1420
Mva1269I GAATGC 2 cut(s) 975, 1185
MvnI CGCG 4 cut(s) 681, 1569, 1579, 1584
MwoI GCNNNNNNNGC 7 cut(s) 77, 147, 1524, 1566, 1592, 1601, 1610
NciI CCSGG 2 cut(s) 605, 741
NdeI CATATG 1 cut(s) 1119
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 9 cut(s) 266, 291, 438, 931, 970, 1076, 1196, 1216, 1408
NmeAIII GCCGAG 1 cut(s) 1612
NmuCI GTSAC 3 cut(s) 555, 718, 1478
NspI RCATGY 3 cut(s) 931, 1196, 1216
PaeR7I CTCGAG 1 cut(s) 366
PagI TCATGA 1 cut(s) 1072
PciI ACATGT 1 cut(s) 1192
PctI GAATGC 2 cut(s) 975, 1185
PfeI GAWTC 3 cut(s) 87, 202, 1257
PflMI CCANNNNNTGG 1 cut(s) 526
PinAI ACCGGT 1 cut(s) 776
Ppu21I YACGTR 1 cut(s) 1102
PscI ACATGT 1 cut(s) 1192
PspFI CCCAGC 2 cut(s) 1270, 1613
PspPI GGNCC 3 cut(s) 779, 1401, 1544
PspXI VCTCGAGB 1 cut(s) 366
PsrI GAACNNNNNNTAC 2 cut(s) 1188, 1220
PstI CTGCAG 2 cut(s) 85, 286
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 1265
PvuII CAGCTG 2 cut(s) 80, 590
RsaI GTAC 6 cut(s) 406, 507, 861, 962, 1387, 1510
RsaNI GTAC 6 cut(s) 405, 506, 860, 961, 1386, 1509
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 6 cut(s) 12, 474, 924, 1056, 1161, 1350
Sau96I GGNCC 3 cut(s) 779, 1401, 1544
ScaI AGTACT 2 cut(s) 406, 1387
ScrFI CCNGG 2 cut(s) 605, 741
SfaNI GCATC 5 cut(s) 268, 1009, 1196, 1548, 1604
SfcI CTRYAG 2 cut(s) 81, 282
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 2 cut(s) 779, 1544
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 4 cut(s) 366, 693, 1343, 1389
SmoI CTYRAG 4 cut(s) 366, 693, 1343, 1389
SsiI CCGC 6 cut(s) 234, 679, 767, 1236, 1516, 1582
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 603, 739
TaaI ACNGT 5 cut(s) 95, 837, 1280, 1320, 1508
TaiI ACGT 4 cut(s) 217, 990, 1035, 1104
TaqI TCGA 4 cut(s) 230, 367, 1143, 1484
TatI WGTACW 5 cut(s) 404, 505, 960, 1385, 1508
TauI GCSGC 3 cut(s) 770, 1518, 1584
TfiI GAWTC 3 cut(s) 87, 202, 1257
Tru1I TTAA 6 cut(s) 12, 474, 924, 1056, 1161, 1350
Tru9I TTAA 6 cut(s) 12, 474, 924, 1056, 1161, 1350
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 3 cut(s) 555, 718, 1478
Tsp45I GTSAC 3 cut(s) 555, 718, 1478
TspDTI ATGAA 3 cut(s) 637, 1117, 1238
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 531
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 2 cut(s) 779, 1544
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 4 cut(s) 1225, 1295, 1368, 1428
XceI RCATGY 3 cut(s) 931, 1196, 1216
XcmI CCANNNNNNNNNTGG 2 cut(s) 853, 1180
XhoI CTCGAG 1 cut(s) 366
XspI CTAG 1 cut(s) 381
ZraI GACGTC 1 cut(s) 1033
ZrmI AGTACT 2 cut(s) 406, 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.