Rroxscaffold_7G00211380
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
61842780 .. 61844495
1716 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00211380.1

Sequence Viewer

Length: 1302 bp
ATGGCCAAGTACCCTTCAGCTAGTATTATACTTCTTGTGGCTCTAGTTTGTGTTTCAGGAGTTACACAAATCAATGGTCTTGATATTCACAATAGTATTTGCAAAACTCTGGTGGAGACACGAGGCTATATTTGTCAAGAGCATCACGTAACAAAAGAAGACGGTTACATTCTCGGGTTGCTAAGAATTCCACATGGACGGTCTGGTAGCAAATCGACCAGGGATCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTCTAGCGGATGCAGCATCATGGCTACTCAATCCACAGGATCAGGCTTTAGCGTTCATCTTGGCTGACAAAGGGTTTGATGTATGGCTTGCTAATACTCGAGGAACGGACTCTAGCCGTGGACACAAATCACTTAGTACTAAGGATCCTGCTTATTGGGACTGGACATGGGAACAGCTGGCTACTTATGATCTTCCAGCCTTGTTCAATTATGTGAATAACCAAACAGGACAGAAGTCACACTATGTTGGTCATTCATTGGGAACGTTGACAATACTAGCTGCCTTGTCCCAACAAAAGCTGAGAAACTCACTAAGATCAGCTGCTTTGCTTAGCCCAATTGCTCATCTGGGTCAAATATCCACACCGCTTTTAAGAGTTGCTACTCAAACATTTTTGGCTGAGCAATTCTACATCTTTGGTCTTCGGGAATTTCCTCCTCTAGGGCGATTAGAACAAACTCTGCAGACAATTCTTTGCATACATCCTGGCGTGGACTGCTCTTACATTTTGACTGCTATTACAGGTCCAAATTGTTGTGTAAGTCCTTCGGGTTTAGATCTTTACTATGATCATACACCACAATCCACTTCCACAAAGAATATCGTACATTTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCGCTAAAAAATTTGCAGCACTACAATCGGTTTACTCCTCCGGTGTACAACATGGCAAATATTCCAAAAGATATTCCTCTTTTCCTCGGTTATGGAGGGAGAGATGCACTTTCAGAAGTCAATGATGTGAAAGCTTTGCTTTATGATCTCAAAGATCATGACAAGGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCATATGGATTTCATTATGGGTTGGAATGCCAATAGAAAACATGATTCTGATTACAGTGACTTAGGATTGATAGAGAAAACAAAAAGACGTAAGATAGTAGAAACTATTACTAAAGAAGAGGCAAGATTTGGAGGTGAGGAGAAATCCAGGGCTTCTGGAGTGAGATTTGGGTACATGGCTTAA

Protein Analysis

433

Amino Acids

48.54

Weight (kDa)

7.67

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 3.3e-18 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 78 - 205 2.8e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 233, 263, 623, 920
AclI AACGTT 1 cut(s) 521
AclWI GGATC 4 cut(s) 231, 303, 395, 408
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 186, 686, 928
AfaI GTAC 5 cut(s) 11, 394, 864, 965, 1292
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 1 cut(s) 463
AjnI CCWGG 3 cut(s) 218, 742, 1265
AluBI AGCT 7 cut(s) 20, 433, 536, 556, 578, 1052, 1090
AluI AGCT 7 cut(s) 20, 433, 536, 556, 578, 1052, 1090
Alw26I GTCTC 2 cut(s) 110, 876
AlwI GGATC 4 cut(s) 231, 303, 395, 408
Ama87I CYCGRG 2 cut(s) 173, 354
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 269, 536, 578, 934
ApoI RAATTY 3 cut(s) 186, 686, 928
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 314, 346
AspS9I GGNCC 1 cut(s) 782
AsuHPI GGTGA 1 cut(s) 1265
AvaI CYCGRG 2 cut(s) 173, 354
AvaII GGWCC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 400
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 165, 671
BbvI GCAGC 4 cut(s) 281, 523, 565, 946
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 926, 960
BciT130I CCWGG 3 cut(s) 220, 744, 1267
BclI TGATCA 2 cut(s) 826, 879
BcoDI GTCTC 2 cut(s) 110, 876
BfaI CTAG 6 cut(s) 21, 44, 260, 369, 533, 698
BfmI CTRYAG 1 cut(s) 719
BglII AGATCT 1 cut(s) 814
BisI GCNGC 5 cut(s) 233, 270, 537, 579, 935
BlpI GCTNAGC 2 cut(s) 587, 657
BlsI GCNGC 5 cut(s) 234, 271, 538, 580, 936
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 220, 744, 1267
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 2 cut(s) 173, 354
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 2 cut(s) 402, 892
BmrFI CCNGG 3 cut(s) 220, 744, 1267
BmsI GCATC 4 cut(s) 151, 256, 281, 1012
BoxI GACNNNNGTC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 165, 671
BpmI CTGGAG 1 cut(s) 1296
Bpu1102I GCTNAGC 2 cut(s) 587, 657
BsaAI YACGTR 2 cut(s) 148, 1105
BsaJI CCNNGG 4 cut(s) 219, 373, 1003, 1266
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 3 cut(s) 220, 744, 1267
BseDI CCNNGG 4 cut(s) 219, 373, 1003, 1266
BseGI GGATG 2 cut(s) 271, 739
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 3 cut(s) 548, 648, 887
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 4 cut(s) 684, 945, 1124, 1271
BseXI GCAGC 4 cut(s) 281, 523, 565, 946
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 2 cut(s) 173, 354
BsiSI CCGG 1 cut(s) 959
BslFI GGGAC 2 cut(s) 428, 529
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 2 cut(s) 110, 876
BsmFI GGGAC 2 cut(s) 428, 529
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 173, 354
Bsp1407I TGTACA 1 cut(s) 963
Bsp1720I GCTNAGC 2 cut(s) 587, 657
BspACI CCGC 4 cut(s) 233, 263, 623, 920
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 549, 649, 886
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 2 cut(s) 402, 892
BspMAI CTGCAG 1 cut(s) 723
BspPI GGATC 4 cut(s) 231, 303, 395, 408
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 4 cut(s) 219, 373, 1003, 1266
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 3 cut(s) 220, 744, 1267
Bst4CI ACNGT 3 cut(s) 164, 201, 1175
Bst6I CTCTTC 2 cut(s) 921, 1230
BstAUI TGTACA 1 cut(s) 963
BstBAI YACGTR 2 cut(s) 148, 1105
BstC8I GCNNGC 2 cut(s) 345, 435
BstDEI CTNAG 9 cut(s) 182, 389, 396, 557, 569, 587, 657, 873, 1180
BstDSI CCRYGG 1 cut(s) 373
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 2 cut(s) 271, 739
BstMAI GTCTC 2 cut(s) 110, 876
BstMWI GCNNNNNNNGC 3 cut(s) 253, 269, 753
BstNI CCWGG 3 cut(s) 220, 744, 1267
BstPAI GACNNNNGTC 1 cut(s) 490
BstSCI CCNGG 3 cut(s) 218, 742, 1265
BstSFI CTRYAG 1 cut(s) 719
BstSNI TACGTA 1 cut(s) 1105
BstV1I GCAGC 4 cut(s) 281, 523, 565, 946
BstV2I GAAGAC 2 cut(s) 165, 671
BstX2I RGATCY 2 cut(s) 400, 814
BstYI RGATCY 2 cut(s) 400, 814
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 2 cut(s) 271, 739
BtsIMutI CAGTG 1 cut(s) 1180
Cac8I GCNNGC 2 cut(s) 345, 435
CciI TCATGA 1 cut(s) 1075
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 5 cut(s) 10, 393, 863, 964, 1291
CviAII CATG 8 cut(s) 194, 251, 276, 423, 970, 1076, 1160, 1294
CviQI GTAC 5 cut(s) 10, 393, 863, 964, 1291
DdeI CTNAG 9 cut(s) 182, 389, 396, 557, 569, 587, 657, 873, 1180
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 921, 1230
EarI CTCTTC 2 cut(s) 921, 1230
Eco105I TACGTA 1 cut(s) 1105
Eco47I GGWCC 1 cut(s) 782
Eco88I CYCGRG 2 cut(s) 173, 354
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 218, 742, 1265
FaeI CATG 8 cut(s) 197, 254, 279, 426, 973, 1079, 1163, 1297
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FaqI GGGAC 2 cut(s) 428, 529
FatI CATG 8 cut(s) 193, 250, 275, 422, 969, 1075, 1159, 1293
FauNDI CATATG 1 cut(s) 1122
FbaI TGATCA 2 cut(s) 826, 879
Fnu4HI GCNGC 5 cut(s) 233, 270, 537, 579, 935
FokI GGATG 2 cut(s) 278, 726
Fsp4HI GCNGC 5 cut(s) 233, 270, 537, 579, 935
FspBI CTAG 6 cut(s) 21, 44, 260, 369, 533, 698
GluI GCNGC 5 cut(s) 233, 270, 537, 579, 935
GsuI CTGGAG 1 cut(s) 1296
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 959
Hin1II CATG 8 cut(s) 197, 254, 279, 426, 973, 1079, 1163, 1297
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 2 cut(s) 1050, 1088
HinfI GANTC 2 cut(s) 365, 1163
HpaII CCGG 1 cut(s) 959
HphI GGTGA 1 cut(s) 1265
Hpy166II GTNNAC 5 cut(s) 377, 525, 751, 951, 964
Hpy188I TCNGA 5 cut(s) 228, 876, 884, 1033, 1168
Hpy188III TCNNGA 6 cut(s) 57, 80, 137, 683, 1076, 1275
Hpy8I GTNNAC 5 cut(s) 377, 525, 751, 951, 964
HpyAV CCTTC 2 cut(s) 24, 813
HpyCH4III ACNGT 3 cut(s) 164, 201, 1175
HpyCH4IV ACGT 4 cut(s) 147, 521, 1104, 1207
HpyCH4V TGCA 7 cut(s) 102, 247, 269, 721, 735, 934, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 269, 753
HpyF3I CTNAG 9 cut(s) 182, 389, 396, 557, 569, 587, 657, 873, 1180
HpySE526I ACGT 4 cut(s) 147, 521, 1104, 1207
Hsp92II CATG 8 cut(s) 197, 254, 279, 426, 973, 1079, 1163, 1297
Ksp22I TGATCA 2 cut(s) 826, 879
Lsp1109I GCAGC 4 cut(s) 281, 523, 565, 946
LweI GCATC 4 cut(s) 151, 256, 281, 1012
MaeI CTAG 6 cut(s) 21, 44, 260, 369, 533, 698
MaeII ACGT 4 cut(s) 147, 521, 1104, 1207
MaeIII GTNAC 5 cut(s) 61, 148, 164, 492, 1175
MboII GAAGA 5 cut(s) 170, 440, 671, 908, 1247
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 400, 814
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 186, 463, 594, 662, 686, 726, 787, 928
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 1121
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 629, 1300
MslI CAYNNNNRTG 1 cut(s) 899
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 433, 578
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 3 cut(s) 220, 744, 1267
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 3 cut(s) 220, 744, 1267
MwoI GCNNNNNNNGC 3 cut(s) 253, 269, 753
NdeI CATATG 1 cut(s) 1122
NlaIII CATG 8 cut(s) 197, 254, 279, 426, 973, 1079, 1163, 1297
NlaIV GGNNCC 2 cut(s) 402, 892
NmuCI GTSAC 2 cut(s) 492, 1175
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 1 cut(s) 1163
PkrI GCNGC 5 cut(s) 234, 271, 538, 580, 936
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 2 cut(s) 148, 1105
PshAI GACNNNNGTC 1 cut(s) 490
Psp1406I AACGTT 1 cut(s) 521
Psp6I CCWGG 3 cut(s) 218, 742, 1265
PspGI CCWGG 3 cut(s) 218, 742, 1265
PspN4I GGNNCC 2 cut(s) 402, 892
PspPI GGNCC 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 723
PsuI RGATCY 2 cut(s) 400, 814
PvuII CAGCTG 2 cut(s) 433, 578
RsaI GTAC 5 cut(s) 11, 394, 864, 965, 1292
RsaNI GTAC 5 cut(s) 10, 393, 863, 964, 1291
RseI CAYNNNNRTG 1 cut(s) 899
SaqAI TTAA 2 cut(s) 629, 1300
SatI GCNGC 5 cut(s) 233, 270, 537, 579, 935
Sau96I GGNCC 1 cut(s) 782
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 220, 744, 1267
SfaNI GCATC 4 cut(s) 151, 256, 281, 1012
SfcI CTRYAG 1 cut(s) 719
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 782
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SnaBI TACGTA 1 cut(s) 1105
Sse9I AATT 8 cut(s) 186, 463, 594, 662, 686, 726, 787, 928
SsiI CCGC 4 cut(s) 233, 263, 623, 920
SspI AATATT 1 cut(s) 979
SspMI CTAG 6 cut(s) 21, 44, 260, 369, 533, 698
StyD4I CCNGG 3 cut(s) 218, 742, 1265
TaaI ACNGT 3 cut(s) 164, 201, 1175
TaiI ACGT 4 cut(s) 150, 524, 1107, 1210
TaqI TCGA 3 cut(s) 215, 355, 906
TasI AATT 8 cut(s) 186, 463, 594, 662, 686, 726, 787, 928
TatI WGTACW 2 cut(s) 392, 963
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 1 cut(s) 1163
Tru1I TTAA 2 cut(s) 629, 1300
Tru9I TTAA 2 cut(s) 629, 1300
TscAI CASTG 1 cut(s) 1180
TseFI GTSAC 2 cut(s) 492, 1175
TseI GCWGC 4 cut(s) 269, 536, 578, 934
Tsp45I GTSAC 2 cut(s) 492, 1175
TspDTI ATGAA 3 cut(s) 301, 501, 1120
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 1 cut(s) 1180
VpaK11BI GGWCC 1 cut(s) 782
XagI CCTNNNNNAGG 1 cut(s) 696
XapI RAATTY 3 cut(s) 186, 686, 928
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 6 cut(s) 21, 44, 260, 369, 533, 698
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.