Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Reverse (-)

21468581 .. 21470655

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G208800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

GTTGCAGCAACAAGAACTAAGCTGCAGTCAATCAGCAATCTGGATGTTGTTGGTATTTGCAAATCAATGGTGGAGACACAAGGCTATACTTGCCAAGAACATCAAGTAACGACAGCAGATGGTTACATCCTTGGCTTGCAGAGAATTCCGAAGGGACGGTCTGGTAATGAGATAGCAGACAGGCAGCCTGTTCTGTTACAACATGGGCTCTTAATGGATGCTTCAGCATGGCTACTCAATCCACCGGATCAATCTTTGGCATTTATCTTGGCAGATAATGGTTTTGATATATGGCTTGCCAACTCTCGCGGGACAAACTCTAGCCACGGACACCCATCACTTAGTCCTGATGATGATCCGGGAACTTTGACTGCCCTTGCCGCCTTCTCCCAAGAAAAGCTGTTAAACTTGCTAAGATCAGCTGCTTTGCTTAGTCCGGTGGCTTATCTGGGTCAGATGTCCTCACTGTTTGTAAGAATCCTAATGGACGTATTTTTAGCAGAGAAACTGAAATTGTTGGGTTTACAAGAATTCCCAAACGGGCAGACACAACAACTTGTGGAGTTTATCTGCACACTACCAGGCATTGACTGCTCCAACTTATTGGCAACTATAACAGGCCCAAATTGCTGCCTCAGTTCTTCAAGCAAAGGTGCTTTATTTAAGCATTTCCCCGAGCCCACTGCGACAAAGAACTTTATACATCTGTCTCAGATGGTCAGAAGGGGAACGATCAAAATGTACGATTATGATATTGAAGACACAAACATGGAACACTACAAGCAGCCTACTCCTCCTGCGTACAACATGACAAACATTCCGAAAAACGTTCCTCTTTTCCTCAGCTACGGACTGAGAGATAAACTTTCTGATGCTAATGATGTGGGGCTTTTGCTTGACAACCTCAAAGATCATGACAAGGAGTCAAGGACAAGCTTGTGCGAGGAGTATGCTCATATGGATTTTATTATAAGTATGAATGCCAATCAAGTTGTGTATAATCCTCTAATGGCCTTCTTCAGGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

344

Amino Acids

37.99

Weight (kDa)

5.66

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	971
AccII	CGCG	1 cut(s)	309
AciI	CCGC	2 cut(s)	309, 381
AclI	AACGTT	1 cut(s)	828
AclWI	GGATC	2 cut(s)	255, 350
AcsI	RAATTY	2 cut(s)	144, 530
AcuI	CTGAAG	2 cut(s)	207, 1003
AfaI	GTAC	2 cut(s)	743, 803
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AgsI	TTSAA	2 cut(s)	645, 758
AhdI	GACNNNNNGTC	1 cut(s)	922
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	5 cut(s)	22, 400, 422, 846, 936
AluI	AGCT	5 cut(s)	22, 400, 422, 846, 936
Alw26I	GTCTC	2 cut(s)	68, 714
AlwI	GGATC	2 cut(s)	255, 350
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	2 cut(s)	619, 1011
ApeKI	GCWGC	6 cut(s)	5, 22, 184, 422, 630, 784
ApoI	RAATTY	2 cut(s)	144, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	1 cut(s)	620
AsuC2I	CCSGG	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	210, 681
BbsI	GAAGAC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	842
BbvI	GCAGC	6 cut(s)	9, 17, 196, 409, 617, 796
BccI	CCATC	3 cut(s)	113, 343, 709
BcgI	CGANNNNNNTGC	4 cut(s)	665, 699, 932, 966
BciT130I	CCWGG	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	68, 714
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	7 cut(s)	6, 23, 185, 381, 423, 631, 785
BlsI	GCNGC	7 cut(s)	7, 24, 186, 382, 424, 632, 786
Bme1390I	CCNGG	2 cut(s)	360, 582
BmeRI	GACNNNNNGTC	1 cut(s)	922
BmeT110I	CYCGRG	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	1025
BmrFI	CCNGG	2 cut(s)	360, 582
BmsI	GCATC	2 cut(s)	208, 862
BpiI	GAAGAC	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	842
BpuMI	CCSGG	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	130, 325
BsaWI	WCCGGW	2 cut(s)	244, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	130, 325
BseGI	GGATG	3 cut(s)	49, 126, 223
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	649, 725, 845, 856
BseRI	GAGGAG	2 cut(s)	783, 959
BseXI	GCAGC	6 cut(s)	9, 17, 196, 409, 617, 796
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	621, 1013
BsiHKCI	CYCGRG	1 cut(s)	674
BsiSI	CCGG	3 cut(s)	245, 359, 437
BslFI	GGGAC	2 cut(s)	168, 325
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmAI	GTCTC	2 cut(s)	68, 714
BsmFI	GGGAC	2 cut(s)	168, 325
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	2 cut(s)	621, 1013
BsoBI	CYCGRG	1 cut(s)	674
Bsp1286I	GDGCHC	2 cut(s)	210, 681
Bsp143I	GATC	5 cut(s)	247, 355, 416, 732, 910
BspACI	CCGC	2 cut(s)	309, 381
BspANI	GGCC	2 cut(s)	621, 1013
BspCNI	CTCAG	4 cut(s)	648, 724, 846, 855
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	1 cut(s)	1025
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	2 cut(s)	255, 350
BssECI	CCNNGG	2 cut(s)	130, 325
BssMI	GATC	5 cut(s)	247, 355, 416, 732, 910
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	159, 468
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstC8I	GCNNGC	2 cut(s)	137, 297
BstDEI	CTNAG	8 cut(s)	18, 341, 413, 431, 635, 711, 842, 854
BstDSI	CCRYGG	1 cut(s)	325
BstENI	CCTNNNNNAGG	1 cut(s)	1018
BstF5I	GGATG	3 cut(s)	49, 126, 223
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	5 cut(s)	250, 358, 419, 735, 913
BstMAI	GTCTC	2 cut(s)	68, 714
BstMBI	GATC	5 cut(s)	247, 355, 416, 732, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 380, 591, 627
BstNI	CCWGG	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	358, 580
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	6 cut(s)	9, 17, 196, 409, 617, 796
BstV2I	GAAGAC	1 cut(s)	765
BstXI	CCANNNNNNTGG	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	621, 1013
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	49, 126, 223
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	464, 681
Cac8I	GCNNGC	2 cut(s)	137, 297
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	742, 802
CviAII	CATG	5 cut(s)	203, 228, 769, 808, 914
CviQI	GTAC	2 cut(s)	742, 802
DdeI	CTNAG	8 cut(s)	18, 341, 413, 431, 635, 711, 842, 854
DpnI	GATC	5 cut(s)	249, 357, 418, 734, 912
DpnII	GATC	5 cut(s)	247, 355, 416, 732, 910
DriI	GACNNNNNGTC	1 cut(s)	922
Eam1105I	GACNNNNNGTC	1 cut(s)	922
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	210, 681
Eco57I	CTGAAG	2 cut(s)	207, 1003
Eco88I	CYCGRG	1 cut(s)	674
EcoNI	CCTNNNNNAGG	1 cut(s)	1018
EcoRI	GAATTC	2 cut(s)	144, 530
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	2 cut(s)	210, 681
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	5 cut(s)	206, 231, 772, 811, 917
FaqI	GGGAC	2 cut(s)	168, 325
FatI	CATG	5 cut(s)	202, 227, 768, 807, 913
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	957
Fnu4HI	GCNGC	7 cut(s)	6, 23, 185, 381, 423, 631, 785
FokI	GGATG	3 cut(s)	56, 113, 230
FriOI	GRGCYC	2 cut(s)	210, 681
Fsp4HI	GCNGC	7 cut(s)	6, 23, 185, 381, 423, 631, 785
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	7 cut(s)	6, 23, 185, 381, 423, 631, 785
HaeIII	GGCC	2 cut(s)	621, 1013
HapII	CCGG	3 cut(s)	245, 359, 437
Hin1II	CATG	5 cut(s)	206, 231, 772, 811, 917
HindIII	AAGCTT	1 cut(s)	934
HinfI	GANTC	2 cut(s)	477, 923
HpaII	CCGG	3 cut(s)	245, 359, 437
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	6 cut(s)	150, 456, 714, 722, 822, 871
Hpy188III	TCNNGA	3 cut(s)	41, 347, 914
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	4 cut(s)	145, 394, 717, 1024
HpyCH4III	ACNGT	2 cut(s)	159, 468
HpyCH4IV	ACGT	2 cut(s)	489, 828
HpyCH4V	TGCA	5 cut(s)	5, 25, 60, 139, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 380, 591, 627
HpyF3I	CTNAG	8 cut(s)	18, 341, 413, 431, 635, 711, 842, 854
HpySE526I	ACGT	2 cut(s)	489, 828
Hsp92II	CATG	5 cut(s)	206, 231, 772, 811, 917
Kzo9I	GATC	5 cut(s)	247, 355, 416, 732, 910
LmnI	GCTCC	2 cut(s)	599, 1029
Lsp1109I	GCAGC	6 cut(s)	9, 17, 196, 409, 617, 796
LweI	GCATC	2 cut(s)	208, 862
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	489, 828
MaeIII	GTNAC	3 cut(s)	106, 122, 195
MalI	GATC	5 cut(s)	249, 357, 418, 734, 912
MboI	GATC	5 cut(s)	247, 355, 416, 732, 910
MboII	GAAGA	3 cut(s)	633, 770, 1009
MhlI	GDGCHC	2 cut(s)	210, 681
MluCI	AATT	4 cut(s)	144, 512, 530, 625
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	1 cut(s)	621
MnlI	CCTC	8 cut(s)	472, 644, 804, 843, 851, 914, 937, 1014
MseI	TTAA	3 cut(s)	212, 404, 663
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	245, 359, 437
MspR9I	CCNGG	2 cut(s)	360, 582
Mva1269I	GAATGC	1 cut(s)	985
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	90, 380, 591, 627
NciI	CCSGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	957
NdeII	GATC	5 cut(s)	247, 355, 416, 732, 910
NlaIII	CATG	5 cut(s)	206, 231, 772, 811, 917
NlaIV	GGNNCC	1 cut(s)	1025
PagI	TCATGA	1 cut(s)	913
PctI	GAATGC	1 cut(s)	985
PfeI	GAWTC	1 cut(s)	477
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	7 cut(s)	7, 24, 186, 382, 424, 632, 786
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
PsiI	TTATAA	1 cut(s)	971
Psp1406I	AACGTT	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	1025
PspPI	GGNCC	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	743, 803
RsaNI	GTAC	2 cut(s)	742, 802
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	212, 404, 663
SatI	GCNGC	7 cut(s)	6, 23, 185, 381, 423, 631, 785
Sau3AI	GATC	5 cut(s)	247, 355, 416, 732, 910
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	2 cut(s)	360, 582
SduI	GDGCHC	2 cut(s)	210, 681
SetI	ASST	9 cut(s)	24, 402, 424, 492, 655, 831, 848, 906, 938
SfaNI	GCATC	2 cut(s)	208, 862
SfcI	CTRYAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	767
Sse9I	AATT	4 cut(s)	144, 512, 530, 625
SsiI	CCGC	2 cut(s)	309, 381
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	358, 580
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	159, 468
TaiI	ACGT	2 cut(s)	492, 831
TasI	AATT	4 cut(s)	144, 512, 530, 625
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	3 cut(s)	212, 404, 663
Tru9I	TTAA	3 cut(s)	212, 404, 663
TscAI	CASTG	2 cut(s)	471, 688
TseI	GCWGC	6 cut(s)	5, 22, 184, 422, 630, 784
TspDTI	ATGAA	1 cut(s)	992
TspGWI	ACGGA	2 cut(s)	342, 864
TspRI	CASTG	2 cut(s)	471, 688
XagI	CCTNNNNNAGG	1 cut(s)	1018
XapI	RAATTY	2 cut(s)	144, 530
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.