Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Forward (+)

28037579 .. 28038715

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G020570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGTCATGATACGTACTCACAATGGTATTTGCAAATCTCTTGTGGAGACACGAGGCTATAGTTGCGAAGAACATCAAGTAACAACAGAAGATGGTTACATTCTCGGATTGCAGAGAATTCCATCTGGACGGTTTGGTAGAAATCCGACCACATCTCAGAAACCGCCTGTTTTGTTGCAACATGGGCTTCTAACGGATGCTACATCATGGCTACTCAATCCATCGGACCAGGCTTCGGCGTTCATCTTGGCTGACAAAGGGTTTGATGTATGGCTTGCTAATTCTCGAGCAACGGACTCTAGCCGTGGACACAAATCACTTGCTACTAATGATCCTGCTTATTGGGACTGGACATGGGAACAGTTGGCTGCTTATGATCTTCCTGCTTTGTTAAATTATGTGAACAAGCAAACAAGACAGAGGTCACACTATGTTGGCCATTCCTTCGGAACGTTGACAATGCTAGCTGCCTTGTCCCAACAAAAGCTTAGAAACTCATTAAGATCAGCTGCTTTGCTTAGTCCAATTGCTTATCTGGGTCACATATCCAGCCCGCTTTTAAGAACCATTATTTGCATACAACCGGGTGTGGACTGTTCCAACATGATGGCTGCTATAACAGGTCCAAATTGCTGCCTGAGTCCTTCAAGTTCATATCTTTACTATAAACATACACCACAATCCACTGCCACAAAGAATATCGTACATTTAAAGTTCGATTACAATCTTCCACTCACAAATCTGCAGCACTACAATAAGTTTACTCCTCCGGCGTACAATATGGCAAATATTCCGAAAGACATTCCTCTTTTCCTCGGCTATGGAGGGAGAGATACACTTTTGGACGTCAACGATGTGAAGGTTTTGCGTAATGACCTCAAAGATCATGACAAGGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCATATGGATTTCTTTATGGGTTGGAATGCGAAACATAAAGTTTATGATCCTCTCCTCACTTTTGTCTGGCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

335

Amino Acids

37.88

Weight (kDa)

8.13

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	13 - 73	9.1e-22	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	55 - 175	6.8e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	849
AciI	CCGC	2 cut(s)	164, 554
AclI	AACGTT	1 cut(s)	452
AclWI	GGATC	2 cut(s)	326, 971
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	846
AfaI	GTAC	3 cut(s)	16, 705, 776
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	648
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	4 cut(s)	467, 487, 509, 901
AluI	AGCT	4 cut(s)	467, 487, 509, 901
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	326, 971
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	6 cut(s)	368, 467, 509, 611, 633, 745
ApoI	RAATTY	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	2 cut(s)	226, 623
AsuC2I	CCSGG	1 cut(s)	585
AsuNHI	GCTAGC	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	226, 623
BalI	TGGCCA	1 cut(s)	438
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	6 cut(s)	355, 454, 496, 598, 620, 757
BccI	CCATC	4 cut(s)	86, 130, 229, 601
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	300, 464
BfmI	CTRYAG	2 cut(s)	58, 743
BisI	GCNGC	6 cut(s)	369, 468, 510, 612, 634, 746
BlsI	GCNGC	6 cut(s)	370, 469, 511, 613, 635, 747
Bme1390I	CCNGG	2 cut(s)	230, 585
Bme18I	GGWCC	2 cut(s)	226, 623
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	226, 623
BmrFI	CCNGG	2 cut(s)	230, 585
BmsI	GCATC	1 cut(s)	187
BmtI	GCTAGC	1 cut(s)	467
BoxI	GACNNNNGTC	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	585
BsaAI	YACGTR	2 cut(s)	14, 916
BsaBI	GATNNNNATC	1 cut(s)	723
BsaHI	GRCGYC	1 cut(s)	846
BsaJI	CCNNGG	2 cut(s)	304, 814
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	304, 814
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	170, 629
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	3 cut(s)	756, 935, 974
BseXI	GCAGC	6 cut(s)	355, 454, 496, 598, 620, 757
BshFI	GGCC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	584, 770
BslFI	GGGAC	2 cut(s)	359, 460
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	359, 460
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	331, 376, 503, 883, 976
BspACI	CCGC	2 cut(s)	164, 554
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	169, 630
BspHI	TCATGA	2 cut(s)	6, 886
BspMAI	CTGCAG	1 cut(s)	747
BspOI	GCTAGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	326, 971
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	304, 814
BssMI	GATC	5 cut(s)	331, 376, 503, 883, 976
BssNI	GRCGYC	1 cut(s)	846
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	132, 363, 596
BstACI	GRCGYC	1 cut(s)	846
BstBAI	YACGTR	2 cut(s)	14, 916
BstC8I	GCNNGC	3 cut(s)	276, 465, 554
BstDEI	CTNAG	4 cut(s)	156, 488, 518, 638
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	5 cut(s)	334, 379, 506, 886, 979
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	5 cut(s)	331, 376, 503, 883, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 184
BstNI	CCWGG	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	228, 583
BstSFI	CTRYAG	2 cut(s)	58, 743
BstSNI	TACGTA	2 cut(s)	14, 916
BstV1I	GCAGC	6 cut(s)	355, 454, 496, 598, 620, 757
BstXI	CCANNNNNNTGG	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	3 cut(s)	276, 465, 554
CciI	TCATGA	2 cut(s)	6, 886
Cfr13I	GGNCC	2 cut(s)	226, 623
Csp6I	GTAC	3 cut(s)	15, 704, 775
CviAII	CATG	6 cut(s)	7, 182, 207, 354, 604, 887
CviQI	GTAC	3 cut(s)	15, 704, 775
DdeI	CTNAG	4 cut(s)	156, 488, 518, 638
DpnI	GATC	5 cut(s)	333, 378, 505, 885, 978
DpnII	GATC	5 cut(s)	331, 376, 503, 883, 976
DraI	TTTAAA	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	436
Eco105I	TACGTA	2 cut(s)	14, 916
Eco47I	GGWCC	2 cut(s)	226, 623
Eco88I	CYCGRG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	6 cut(s)	10, 185, 210, 357, 607, 890
FaqI	GGGAC	2 cut(s)	359, 460
FatI	CATG	6 cut(s)	6, 181, 206, 353, 603, 886
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	933
Fnu4HI	GCNGC	6 cut(s)	369, 468, 510, 612, 634, 746
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	6 cut(s)	369, 468, 510, 612, 634, 746
FspBI	CTAG	2 cut(s)	300, 464
GluI	GCNGC	6 cut(s)	369, 468, 510, 612, 634, 746
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	2 cut(s)	584, 770
Hin1I	GRCGYC	1 cut(s)	846
Hin1II	CATG	6 cut(s)	10, 185, 210, 357, 607, 890
HincII	GTYRAC	2 cut(s)	456, 850
HindII	GTYRAC	2 cut(s)	456, 850
HindIII	AAGCTT	2 cut(s)	485, 899
HinfI	GANTC	2 cut(s)	296, 640
HpaII	CCGG	2 cut(s)	584, 770
Hpy166II	GTNNAC	6 cut(s)	308, 403, 456, 592, 762, 850
Hpy188I	TCNGA	6 cut(s)	107, 147, 159, 226, 449, 795
Hpy188III	TCNNGA	4 cut(s)	7, 126, 285, 887
Hpy8I	GTNNAC	6 cut(s)	308, 403, 456, 592, 762, 850
HpyAV	CCTTC	3 cut(s)	454, 654, 853
HpyCH4III	ACNGT	3 cut(s)	132, 363, 596
HpyCH4IV	ACGT	4 cut(s)	13, 452, 846, 915
HpyCH4V	TGCA	5 cut(s)	33, 112, 178, 576, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 184
HpyF3I	CTNAG	4 cut(s)	156, 488, 518, 638
HpySE526I	ACGT	4 cut(s)	13, 452, 846, 915
Hsp92I	GRCGYC	1 cut(s)	846
Hsp92II	CATG	6 cut(s)	10, 185, 210, 357, 607, 890
Kzo9I	GATC	5 cut(s)	331, 376, 503, 883, 976
Lsp1109I	GCAGC	6 cut(s)	355, 454, 496, 598, 620, 757
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	300, 464
MaeII	ACGT	4 cut(s)	13, 452, 846, 915
MaeIII	GTNAC	4 cut(s)	79, 95, 423, 539
MalI	GATC	5 cut(s)	333, 378, 505, 885, 978
MboI	GATC	5 cut(s)	331, 376, 503, 883, 976
MboII	GAAGA	4 cut(s)	80, 101, 371, 719
MfeI	CAATTG	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	5 cut(s)	117, 280, 394, 525, 628
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	290, 649
MmeI	TCCRAC	3 cut(s)	170, 624, 932
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	4 cut(s)	392, 500, 560, 710
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	2 cut(s)	584, 770
MspR9I	CCNGG	2 cut(s)	230, 585
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	961
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	63, 184
NciI	CCSGG	1 cut(s)	585
NdeI	CATATG	1 cut(s)	933
NdeII	GATC	5 cut(s)	331, 376, 503, 883, 976
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	6 cut(s)	10, 185, 210, 357, 607, 890
NmeAIII	GCCGAG	1 cut(s)	795
NmuCI	GTSAC	2 cut(s)	423, 539
PaeR7I	CTCGAG	1 cut(s)	285
PagI	TCATGA	2 cut(s)	6, 886
PctI	GAATGC	1 cut(s)	961
PkrI	GCNGC	6 cut(s)	370, 469, 511, 613, 635, 747
PleI	GAGTC	2 cut(s)	290, 648
PpsI	GAGTC	2 cut(s)	290, 648
Ppu21I	YACGTR	2 cut(s)	14, 916
PshAI	GACNNNNGTC	1 cut(s)	421
Psp1406I	AACGTT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	226, 623
PstI	CTGCAG	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	16, 705, 776
RsaNI	GTAC	3 cut(s)	15, 704, 775
SaqAI	TTAA	4 cut(s)	392, 500, 560, 710
SatI	GCNGC	6 cut(s)	369, 468, 510, 612, 634, 746
Sau3AI	GATC	5 cut(s)	331, 376, 503, 883, 976
Sau96I	GGNCC	2 cut(s)	226, 623
SchI	GAGTC	2 cut(s)	290, 649
ScrFI	CCNGG	2 cut(s)	230, 585
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	2 cut(s)	58, 743
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	226, 623
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
SnaBI	TACGTA	2 cut(s)	14, 916
Sse9I	AATT	5 cut(s)	117, 280, 394, 525, 628
SsiI	CCGC	2 cut(s)	164, 554
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	2 cut(s)	300, 464
StyD4I	CCNGG	2 cut(s)	228, 583
TaaI	ACNGT	3 cut(s)	132, 363, 596
TaiI	ACGT	4 cut(s)	16, 455, 849, 918
TaqI	TCGA	2 cut(s)	286, 717
TasI	AATT	5 cut(s)	117, 280, 394, 525, 628
Tru1I	TTAA	4 cut(s)	392, 500, 560, 710
Tru9I	TTAA	4 cut(s)	392, 500, 560, 710
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	2 cut(s)	423, 539
TseI	GCWGC	6 cut(s)	368, 467, 509, 611, 633, 745
Tsp45I	GTSAC	2 cut(s)	423, 539
TspDTI	ATGAA	2 cut(s)	232, 642
TspGWI	ACGGA	2 cut(s)	209, 308
TspRI	CASTG	1 cut(s)	691
VpaK11BI	GGWCC	2 cut(s)	226, 623
XapI	RAATTY	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	285
XspI	CTAG	2 cut(s)	300, 464
ZraI	GACGTC	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.