pycom09g04010
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000706
Physical Location & Seq
Forward (+)
2976142 .. 2977125
984 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04010.4

Sequence Viewer

Length: 579 bp
ATGTCCTCACCCCTAGCAAGAGCTGTTGCTGAAAACTTTATTGCCGAGGCATTATACAATGCAGATTTAAGACAATTTAATCTGAAACGGAAGGCGGCAGTCAAAGTTCTGAAGGCTGTCTGCCGGAAACCAGGCGTTGATTGCACCCATTGGTTGACTGCATTCACCGGGAAGAATTGCTGCTTAAATTCTTCCATAGTAGATGTTCTTCTAGACCATGAGCCTCAGTCAACTTCAACCAAAAACTTGGTACATATGTCCCAGATGATAAGGGACGGAACAGTTGCAATGTTTAACTACAAGGACGAGAACATGCAGCACTACGGGCAGCCCAATCCTCCCGTGTACAGCATGACAAGCATTCCAGATGAGCTTCCTCTCTTCCTCAGTTACGGTGGGGCAGATGCCCTCTCCGACATCAAAGATGTGAAGCTGCTGCTGAAGAGCCTCAAAAACCATGATGGAGATAAGCTTGTGCTTCAGTATCTAGACGATTACGCTCATTTAGATTTTGTGATGGGTGAAACTGCTAAGCAAGATGTGTATGATCCTCTCATGGCTTTCCTTAGACTTCAATGA

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

6.04

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 3 cut(s) 131, 461, 464
AfaI GTAC 2 cut(s) 252, 347
AgsI TTSAA 2 cut(s) 237, 575
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 4 cut(s) 23, 373, 433, 472
AluI AGCT 4 cut(s) 23, 373, 433, 472
AlwI GGATC 1 cut(s) 542
ApeKI GCWGC 5 cut(s) 180, 316, 328, 433, 436
ApoI RAATTY 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 157, 533
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbvI GCAGC 5 cut(s) 167, 328, 340, 420, 423
BccI CCATC 2 cut(s) 455, 511
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 169
BfaI CTAG 3 cut(s) 14, 212, 488
BisI GCNGC 6 cut(s) 96, 181, 317, 329, 434, 437
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 6 cut(s) 97, 182, 318, 330, 435, 438
Bme1390I CCNGG 2 cut(s) 132, 169
BmrFI CCNGG 2 cut(s) 132, 169
BmsI GCATC 1 cut(s) 394
Bpu1102I GCTNAGC 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 239, 400
BseXI GCAGC 5 cut(s) 167, 328, 340, 420, 423
BsiSI CCGG 2 cut(s) 124, 168
BslFI GGGAC 2 cut(s) 244, 287
BsmFI GGGAC 2 cut(s) 244, 287
BsmI GAATGC 2 cut(s) 161, 360
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 1 cut(s) 547
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 238, 399
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 283, 395
Bst6I CTCTTC 2 cut(s) 386, 437
BstAUI TGTACA 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 225, 386, 531, 566
BstKTI GATC 1 cut(s) 550
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 3 cut(s) 141, 325, 357
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 130, 167
BstV1I GCAGC 5 cut(s) 167, 328, 340, 420, 423
BstXI CCANNNNNNTGG 1 cut(s) 247
Csp6I GTAC 2 cut(s) 251, 346
CviAII CATG 5 cut(s) 218, 313, 352, 458, 556
CviJI RGCY 9 cut(s) 23, 116, 223, 331, 373, 433, 447, 472, 560
CviKI_1 RGCY 9 cut(s) 23, 116, 223, 331, 373, 433, 447, 472, 560
CviQI GTAC 2 cut(s) 251, 346
DdeI CTNAG 4 cut(s) 225, 386, 531, 566
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 386, 437
EarI CTCTTC 2 cut(s) 386, 437
Eco57I CTGAAG 3 cut(s) 131, 461, 464
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 5 cut(s) 221, 316, 355, 461, 559
FaqI GGGAC 2 cut(s) 244, 287
FatI CATG 5 cut(s) 217, 312, 351, 457, 555
FauNDI CATATG 1 cut(s) 255
Fnu4HI GCNGC 6 cut(s) 96, 181, 317, 329, 434, 437
Fsp4HI GCNGC 6 cut(s) 96, 181, 317, 329, 434, 437
FspBI CTAG 3 cut(s) 14, 212, 488
GluI GCNGC 6 cut(s) 96, 181, 317, 329, 434, 437
HapII CCGG 2 cut(s) 124, 168
Hin1II CATG 5 cut(s) 221, 316, 355, 461, 559
HincII GTYRAC 2 cut(s) 156, 231
HindII GTYRAC 2 cut(s) 156, 231
HindIII AAGCTT 1 cut(s) 470
HpaII CCGG 2 cut(s) 124, 168
HphI GGTGA 2 cut(s) 157, 533
Hpy166II GTNNAC 3 cut(s) 156, 231, 346
Hpy188I TCNGA 3 cut(s) 84, 111, 415
Hpy188III TCNNGA 3 cut(s) 212, 365, 488
Hpy8I GTNNAC 3 cut(s) 156, 231, 346
HpyAV CCTTC 2 cut(s) 85, 106
HpyCH4III ACNGT 2 cut(s) 283, 395
HpyCH4V TGCA 5 cut(s) 62, 144, 161, 287, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 325, 357
HpyF3I CTNAG 4 cut(s) 225, 386, 531, 566
Hsp92II CATG 5 cut(s) 221, 316, 355, 461, 559
Kzo9I GATC 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 437
LpnPI CCDG 6 cut(s) 117, 137, 144, 181, 275, 378
Lsp1109I GCAGC 5 cut(s) 167, 328, 340, 420, 423
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 14, 212, 488
MaeIII GTNAC 1 cut(s) 389
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 5 cut(s) 183, 184, 200, 373, 454
MluCI AATT 3 cut(s) 74, 175, 187
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 9 cut(s) 16, 40, 234, 348, 387, 395, 419, 458, 561
MseI TTAA 4 cut(s) 68, 78, 185, 294
MspI CCGG 2 cut(s) 124, 168
MspR9I CCNGG 2 cut(s) 132, 169
Mva1269I GAATGC 2 cut(s) 161, 360
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 141, 325, 357
NciI CCSGG 1 cut(s) 169
NdeI CATATG 1 cut(s) 255
NdeII GATC 1 cut(s) 547
NlaIII CATG 5 cut(s) 221, 316, 355, 461, 559
NmeAIII GCCGAG 1 cut(s) 70
NspI RCATGY 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 437
PctI GAATGC 2 cut(s) 161, 360
PkrI GCNGC 6 cut(s) 97, 182, 318, 330, 435, 438
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
RsaI GTAC 2 cut(s) 252, 347
RsaNI GTAC 2 cut(s) 251, 346
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 4 cut(s) 68, 78, 185, 294
SatI GCNGC 6 cut(s) 96, 181, 317, 329, 434, 437
Sau3AI GATC 1 cut(s) 547
ScrFI CCNGG 2 cut(s) 132, 169
SetI ASST 4 cut(s) 25, 375, 435, 474
SfaNI GCATC 1 cut(s) 394
Sse9I AATT 3 cut(s) 74, 175, 187
SsiI CCGC 1 cut(s) 95
SspMI CTAG 3 cut(s) 14, 212, 488
StyD4I CCNGG 2 cut(s) 130, 167
TaaI ACNGT 2 cut(s) 283, 395
TasI AATT 3 cut(s) 74, 175, 187
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 98
Tru1I TTAA 4 cut(s) 68, 78, 185, 294
Tru9I TTAA 4 cut(s) 68, 78, 185, 294
TseI GCWGC 5 cut(s) 180, 316, 328, 433, 436
TspGWI ACGGA 2 cut(s) 103, 291
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 2 cut(s) 211, 487
XceI RCATGY 1 cut(s) 316
XspI CTAG 3 cut(s) 14, 212, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.