Rroxscaffold_7G00211340
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
61789391 .. 61791409
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211340.1

Sequence Viewer

Length: 1386 bp
ATGGCCAAGTACCTTTCAGCTAGTATTCTCCTTCTTGTGGCTCTAGTTTGTGTTTCAGGAGTTGCACAAACCATCGGTCTTGATATTCACAATAATATTTGCAAATCTCTGGTGAAGACACGAGGTTATACTTGCCAAGAACATCAAGTAACAACTGAAGATGGTTACATTCTCAGGTTGCTAAGAATTCCATATGGACGGTTTGGTAGCAAATCGACCACGGATCAGAAGCCACCTGTTTTATTACAACATGGGCTTCTAACGGATGCAGCATCATGGCTACTTAATCCACCGAATCAGGCTTTGGCGTTCATCTTAGCTGACAAAGGATTTGATGTATGGCTTGCTAATGCTCGAGGAACGGACTCTAGTCGTGGACACAAATCACTTAGTACTAATGATCCTGATTATTGGGACTGGACATGGGAACAGTTGGCTGCTTATGATCTTCCTGCTTTGTTTAATTATGTGAACAACCAAACCGGACAGAAGTCACACTATGTTGGCCATTCCTTGGGAACGTTGACGGTACTAGCTGCCTTGTCCCAACAAAAGCTGAGAAACTCAATAAGATCAGCTGCTTTGCTTAGCCCGATTGCTCATCTGGGTCAGATATCCACACCGCTTTTAAGAGTTGCTACTCAAACATTTTTGCCTGAGCAATTCTACATCCTTGGTCTCCAGGAATTTCCTCCGCTAGGGCGATTAGAACAAACTCTGCAGACAATTCTTTGCATACATCCTGGCGTGGACTGCTCTTTCATTTTGACTGCTATAACAGGTCCAAATTGTTGTCTAAGTCCTTCAAGTTTAGATCTTTACTATGAGCTTACACCACAATCCACTTCCACAAAGAATATCGTACATTTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGACTACACTCTTCCGCTAAAAAATTTGCAGCACTACAATCGGTTTACTCCTCCGGTGTACAACATGGCAAACATTCCAAAAGATATTCCTCTTTTCCTCAGTTATGGAGGGAGAGATGCACTTTCAGACGTCAACGATGTGAAAGCTCTGCTTTATGACCTCAAAGATCATGACAAAGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCATTTGGATTTCATTATGGGTTGGAATGCCAATAGAAAATTGAGAAAAGGGCGTATACTTGCACCTTCGACATTTAAAACATACGATGTAATACAATCTGACATGAGCATGAACCCCAAGACACTTCGCAGGTACTCCCAAATTAAAGTGAGTTTTACAACTTCTAGTTGGAAGGAAGCAATTACAAGAGGTTGGGAAGGTGTATATTTGAATCTAGCTGCCCTCCGCACACTTAACAACTACTTGATATTTACAAACATGAATTAA

Protein Analysis

461

Amino Acids

51.9

Weight (kDa)

8.77

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 3e-20 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 78 - 201 2.2e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1038
Acc36I ACCTGC 1 cut(s) 1239
AccB7I CCANNNNNTGG 1 cut(s) 514
AccI GTMKAC 1 cut(s) 1174
AciI CCGC 4 cut(s) 623, 695, 920, 1345
AclI AACGTT 1 cut(s) 521
AclWI GGATC 2 cut(s) 231, 395
AcoI YGGCCR 2 cut(s) 3, 505
AcsI RAATTY 3 cut(s) 186, 686, 928
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 1035
AfaI GTAC 6 cut(s) 11, 394, 531, 864, 965, 1253
AfiI CCNNNNNNNGG 3 cut(s) 37, 514, 698
AgsI TTSAA 2 cut(s) 807, 1330
AjnI CCWGG 2 cut(s) 681, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 9 cut(s) 20, 320, 536, 556, 578, 829, 1052, 1090, 1337
AluI AGCT 9 cut(s) 20, 320, 536, 556, 578, 829, 1052, 1090, 1337
Alw26I GTCTC 2 cut(s) 683, 876
AlwI GGATC 2 cut(s) 231, 395
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 2 cut(s) 3, 505
ApeKI GCWGC 6 cut(s) 269, 437, 536, 578, 934, 1337
ApoI RAATTY 3 cut(s) 186, 686, 928
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 314, 346
AspS9I GGNCC 1 cut(s) 782
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 1 cut(s) 782
BalI TGGCCA 2 cut(s) 5, 507
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 6 cut(s) 281, 424, 523, 565, 946, 1324
BccI CCATC 2 cut(s) 80, 155
BcgI CGANNNNNNTGC 2 cut(s) 926, 960
BciT130I CCWGG 2 cut(s) 683, 744
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 2 cut(s) 683, 876
BfaI CTAG 7 cut(s) 21, 44, 369, 533, 698, 1284, 1334
BfmI CTRYAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 1239
BglII AGATCT 1 cut(s) 814
BisI GCNGC 6 cut(s) 270, 438, 537, 579, 935, 1338
BlpI GCTNAGC 1 cut(s) 587
BlsI GCNGC 6 cut(s) 271, 439, 538, 580, 936, 1339
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 683, 744
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 1 cut(s) 892
BmrFI CCNGG 2 cut(s) 683, 744
BmsI GCATC 3 cut(s) 256, 281, 1012
BoxI GACNNNNGTC 2 cut(s) 369, 490
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 665
Bpu10I CCTNAGC 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 587
BsaAI YACGTR 1 cut(s) 1105
BsaHI GRCGYC 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 3 cut(s) 219, 513, 673
BsaWI WCCGGW 2 cut(s) 482, 958
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 514, 698
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 683, 744
BseDI CCNNGG 3 cut(s) 219, 513, 673
BseGI GGATG 3 cut(s) 271, 669, 739
BseLI CCNNNNNNNGG 3 cut(s) 37, 514, 698
BseMII CTCAG 5 cut(s) 187, 548, 648, 887, 1018
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 2 cut(s) 945, 1124
BseXI GCAGC 6 cut(s) 281, 424, 523, 565, 946, 1324
BshFI GGCC 2 cut(s) 5, 507
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 2 cut(s) 483, 959
BslFI GGGAC 2 cut(s) 428, 529
BslI CCNNNNNNNGG 3 cut(s) 37, 514, 698
BsmAI GTCTC 2 cut(s) 683, 876
BsmFI GGGAC 2 cut(s) 428, 529
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 2 cut(s) 5, 507
Bso31I GGTCTC 1 cut(s) 683
BsoBI CYCGRG 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
Bsp1720I GCTNAGC 1 cut(s) 587
BspACI CCGC 4 cut(s) 623, 695, 920, 1345
BspANI GGCC 2 cut(s) 5, 507
BspCNI CTCAG 5 cut(s) 186, 549, 649, 886, 1017
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 1 cut(s) 892
BspMAI CTGCAG 1 cut(s) 723
BspMI ACCTGC 1 cut(s) 1239
BspPI GGATC 2 cut(s) 231, 395
BspTNI GGTCTC 1 cut(s) 683
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 219, 513, 673
BssMI GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
BssNAI GTATAC 1 cut(s) 1175
BssNI GRCGYC 1 cut(s) 1035
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 513, 673
Bst1107I GTATAC 1 cut(s) 1175
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 683, 744
Bst4CI ACNGT 3 cut(s) 201, 432, 529
Bst6I CTCTTC 1 cut(s) 921
BstACI GRCGYC 1 cut(s) 1035
BstAUI TGTACA 1 cut(s) 963
BstBAI YACGTR 1 cut(s) 1105
BstC8I GCNNGC 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 3 cut(s) 271, 669, 739
BstKTI GATC 7 cut(s) 226, 403, 448, 575, 817, 882, 1075
BstMAI GTCTC 2 cut(s) 683, 876
BstMBI GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 753
BstNI CCWGG 2 cut(s) 683, 744
BstPAI GACNNNNGTC 2 cut(s) 369, 490
BstSCI CCNGG 2 cut(s) 681, 742
BstSFI CTRYAG 1 cut(s) 719
BstSNI TACGTA 1 cut(s) 1105
BstV1I GCAGC 6 cut(s) 281, 424, 523, 565, 946, 1324
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZ17I GTATAC 1 cut(s) 1175
BsuRI GGCC 2 cut(s) 5, 507
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 3 cut(s) 271, 669, 739
BveI ACCTGC 1 cut(s) 1239
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 1075
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 6 cut(s) 10, 393, 530, 863, 964, 1252
CviAII CATG 8 cut(s) 251, 276, 423, 970, 1076, 1222, 1228, 1378
CviQI GTAC 6 cut(s) 10, 393, 530, 863, 964, 1252
DpnI GATC 7 cut(s) 225, 402, 447, 574, 816, 881, 1074
DpnII GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
DraI TTTAAA 1 cut(s) 1195
EaeI YGGCCR 2 cut(s) 3, 505
Eam1104I CTCTTC 1 cut(s) 921
EarI CTCTTC 1 cut(s) 921
Eco105I TACGTA 1 cut(s) 1105
Eco130I CCWWGG 2 cut(s) 513, 673
Eco31I GGTCTC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 681, 742
EcoRV GATATC 1 cut(s) 615
EcoT14I CCWWGG 2 cut(s) 513, 673
ErhI CCWWGG 2 cut(s) 513, 673
FaeI CATG 8 cut(s) 254, 279, 426, 973, 1079, 1225, 1231, 1381
FalI AAGNNNNNCTT 4 cut(s) 1041, 1073, 1074, 1106
FaqI GGGAC 2 cut(s) 428, 529
FatI CATG 8 cut(s) 250, 275, 422, 969, 1075, 1221, 1227, 1377
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 1 cut(s) 1174
Fnu4HI GCNGC 6 cut(s) 270, 438, 537, 579, 935, 1338
FokI GGATG 3 cut(s) 278, 656, 726
Fsp4HI GCNGC 6 cut(s) 270, 438, 537, 579, 935, 1338
FspBI CTAG 7 cut(s) 21, 44, 369, 533, 698, 1284, 1334
GluI GCNGC 6 cut(s) 270, 438, 537, 579, 935, 1338
GsuI CTGGAG 1 cut(s) 665
HaeIII GGCC 2 cut(s) 5, 507
HapII CCGG 2 cut(s) 483, 959
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 8 cut(s) 254, 279, 426, 973, 1079, 1225, 1231, 1381
HincII GTYRAC 2 cut(s) 525, 1039
HindII GTYRAC 2 cut(s) 525, 1039
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 3 cut(s) 295, 365, 1330
HpaII CCGG 2 cut(s) 483, 959
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 8 cut(s) 377, 472, 525, 751, 951, 964, 1039, 1175
Hpy188I TCNGA 6 cut(s) 228, 612, 876, 884, 1033, 1219
Hpy188III TCNNGA 4 cut(s) 57, 80, 404, 1076
Hpy8I GTNNAC 8 cut(s) 377, 472, 525, 751, 951, 964, 1039, 1175
HpyAV CCTTC 5 cut(s) 41, 813, 1194, 1285, 1310
HpyCH4III ACNGT 3 cut(s) 201, 432, 529
HpyCH4IV ACGT 3 cut(s) 521, 1035, 1104
HpyCH4V TGCA 8 cut(s) 65, 102, 269, 721, 735, 934, 1025, 1181
HpyF10VI GCNNNNNNNGC 1 cut(s) 753
HpySE526I ACGT 3 cut(s) 521, 1035, 1104
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 8 cut(s) 254, 279, 426, 973, 1079, 1225, 1231, 1381
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
Lsp1109I GCAGC 6 cut(s) 281, 424, 523, 565, 946, 1324
LweI GCATC 3 cut(s) 256, 281, 1012
MaeI CTAG 7 cut(s) 21, 44, 369, 533, 698, 1284, 1334
MaeII ACGT 3 cut(s) 521, 1035, 1104
MaeIII GTNAC 3 cut(s) 148, 164, 492
MalI GATC 7 cut(s) 225, 402, 447, 574, 816, 881, 1074
MboI GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
MboII GAAGA 4 cut(s) 127, 170, 440, 908
MflI RGATCY 1 cut(s) 814
MlsI TGGCCA 2 cut(s) 5, 507
MluNI TGGCCA 2 cut(s) 5, 507
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 1121, 1268
Mox20I TGGCCA 2 cut(s) 5, 507
MscI TGGCCA 2 cut(s) 5, 507
MseI TTAA 7 cut(s) 285, 462, 629, 1194, 1263, 1353, 1384
MslI CAYNNNNRTG 2 cut(s) 899, 1226
Msp20I TGGCCA 2 cut(s) 5, 507
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 2 cut(s) 483, 959
MspR9I CCNGG 2 cut(s) 683, 744
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 2 cut(s) 683, 744
MwoI GCNNNNNNNGC 1 cut(s) 753
NdeI CATATG 1 cut(s) 193
NdeII GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
NlaIII CATG 8 cut(s) 254, 279, 426, 973, 1079, 1225, 1231, 1381
NlaIV GGNNCC 1 cut(s) 892
NmuCI GTSAC 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 2 cut(s) 295, 1330
PflMI CCANNNNNTGG 1 cut(s) 514
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 6 cut(s) 271, 439, 538, 580, 936, 1339
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 1105
PshAI GACNNNNGTC 2 cut(s) 369, 490
Psp1406I AACGTT 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 681, 742
PspGI CCWGG 2 cut(s) 681, 742
PspN4I GGNNCC 1 cut(s) 892
PspPI GGNCC 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 723
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 6 cut(s) 11, 394, 531, 864, 965, 1253
RsaNI GTAC 6 cut(s) 10, 393, 530, 863, 964, 1252
RseI CAYNNNNRTG 2 cut(s) 899, 1226
SaqAI TTAA 7 cut(s) 285, 462, 629, 1194, 1263, 1353, 1384
SatI GCNGC 6 cut(s) 270, 438, 537, 579, 935, 1338
Sau3AI GATC 7 cut(s) 223, 400, 445, 572, 814, 879, 1072
Sau96I GGNCC 1 cut(s) 782
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 683, 744
SfaNI GCATC 3 cut(s) 256, 281, 1012
SfcI CTRYAG 1 cut(s) 719
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 782
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 899, 1226
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SnaBI TACGTA 1 cut(s) 1105
SsiI CCGC 4 cut(s) 623, 695, 920, 1345
SspI AATATT 1 cut(s) 97
SspMI CTAG 7 cut(s) 21, 44, 369, 533, 698, 1284, 1334
StyD4I CCNGG 2 cut(s) 681, 742
StyI CCWWGG 2 cut(s) 513, 673
TaaI ACNGT 3 cut(s) 201, 432, 529
TaiI ACGT 3 cut(s) 524, 1038, 1107
TaqI TCGA 4 cut(s) 215, 355, 906, 1187
TaqII GACCGA 1 cut(s) 65
TatI WGTACW 2 cut(s) 392, 963
TfiI GAWTC 2 cut(s) 295, 1330
Tru1I TTAA 7 cut(s) 285, 462, 629, 1194, 1263, 1353, 1384
Tru9I TTAA 7 cut(s) 285, 462, 629, 1194, 1263, 1353, 1384
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 6 cut(s) 269, 437, 536, 578, 934, 1337
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 4 cut(s) 301, 751, 1120, 1244
TspGWI ACGGA 3 cut(s) 236, 278, 377
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 782
XagI CCTNNNNNAGG 1 cut(s) 696
XapI RAATTY 3 cut(s) 186, 686, 928
XhoI CTCGAG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 1174
XspI CTAG 7 cut(s) 21, 44, 369, 533, 698, 1284, 1334
ZraI GACGTC 1 cut(s) 1036
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.