RLG00000020989
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
70866118 .. 70867314
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020989

Sequence Viewer

Length: 1170 bp
ATGGCCAAGTACCCTTCAGCTAGTATTCTACTTCTTGTGGCTCTAGTTTGTGTTTCAGGAGTTGCACAAACCAGAGGTCATGATATTCACAATGGTATTTGCAAATCACTTGTGGAGACACGAGGCTATATTTGCCAAGAACATCAATTAACAACAGAAGATGGTTACATTCTCGGGTTGCAGAGAATTCCATATGGACGGTCTGGTAGAAATTCAGCCACACATCAGAAGCCGCCTGATGCTACATCATGGCTACTCAATCCACCGGATCAGACTTTGGCGTTCATCTTGGCTGACAAAGGGTTTGACGTATGGCTTGCTAATTCTCGAGGAACGGACTCTAGCCGTGGACACAAATCACTTACTACTAATGATCCTGCTTATTGGGAATGGACATGGGAACAGTTGGCTGCTTATGATCTTCCTGCTTTGTTCAATTATGTGAACAAGCAAACAGGACAGAAGTCACACTACGTTGGCCATTCCTTAGGAACATTGACAATACTAGCTGCCTTGTCCCAACAAAAGTTAAGAAACTCATTAAGATCAGCTGCTTTGCTTGCCCCAATTGCTTATCTGGGTCAGATATCCACACTGTTTATAAGAGTTGCTACTCAAACATTTTATGCTGAGCAATTCTACATCGTTGGTGTCCGGGAATTTCCTCCTCTACCGCGATTAGAACTAACTCTGCAGACCATTATTTGCATGCAACCGGGCGTGGACTGTTCCAACTTTCTGGCTGCTGTAACAGGTCCAAATTGTTGCCTAAATCCTTCAAGTTTAGATCTTTACTATAATCATACACCACAATCCACTGCCACAAAGAATTTCATACATTTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCACTCACAAATCTGCAGCACTACAATACGTTTACTCCTCCAGTGTACAACATGGCAAACATTCAGAAAGACATTCCACTTTTCCTCAGCTATGGAGGGAGAGATGCACTCTCAGACGTCAACGATGTGAGGACTTTGCTTAATGACCTCAATGATCATGACAAGGACAAGCTTGTCGAACAATACATAGAGGAGTATGCTCATTATGATTTCATTATGGGTGAGAATGCCCGTCAGAAAGTCTATGATCCTCTTCTCGCTTTCTTCAGGCAACATTGA

Protein Analysis

390

Amino Acids

43.83

Weight (kDa)

6.49

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 74 3.6e-10 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 97 - 193 3.8e-09 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
AasI GACNNNNNNGTC 1 cut(s) 1064
AatII GACGTC 1 cut(s) 1011
AccII CGCG 1 cut(s) 676
AciI CCGC 2 cut(s) 233, 674
AclWI GGATC 3 cut(s) 276, 368, 1133
AcoI YGGCCR 2 cut(s) 3, 478
AcsI RAATTY 4 cut(s) 186, 211, 659, 829
AcuI CTGAAG 1 cut(s) 1141
AcyI GRCGYC 1 cut(s) 1008
AfaI GTAC 2 cut(s) 11, 938
AgsI TTSAA 2 cut(s) 436, 780
AluBI AGCT 5 cut(s) 20, 509, 551, 981, 1063
AluI AGCT 5 cut(s) 20, 509, 551, 981, 1063
Alw26I GTCTC 2 cut(s) 110, 849
AlwI GGATC 3 cut(s) 276, 368, 1133
Ama87I CYCGRG 2 cut(s) 173, 327
AoxI GGCC 2 cut(s) 3, 478
ApeKI GCWGC 5 cut(s) 410, 509, 551, 743, 907
ApoI RAATTY 4 cut(s) 186, 211, 659, 829
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 287, 319
AspS9I GGNCC 1 cut(s) 755
AsuC2I CCSGG 2 cut(s) 656, 717
AsuHPI GGTGA 1 cut(s) 1124
AvaI CYCGRG 2 cut(s) 173, 327
AvaII GGWCC 1 cut(s) 755
AxyI CCTNAGG 1 cut(s) 487
BalI TGGCCA 2 cut(s) 5, 480
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BauI CACGAG 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 977
BbvI GCAGC 5 cut(s) 397, 496, 538, 730, 919
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 330
BclI TGATCA 2 cut(s) 852, 1045
BcnI CCSGG 2 cut(s) 656, 717
BcoDI GTCTC 2 cut(s) 110, 849
BfaI CTAG 4 cut(s) 21, 44, 342, 506
BfmI CTRYAG 2 cut(s) 692, 905
BglII AGATCT 1 cut(s) 787
BisI GCNGC 6 cut(s) 233, 411, 510, 552, 744, 908
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 6 cut(s) 234, 412, 511, 553, 745, 909
Bme1390I CCNGG 2 cut(s) 656, 717
Bme18I GGWCC 1 cut(s) 755
BmeT110I CYCGRG 2 cut(s) 173, 327
BmgT120I GGNCC 1 cut(s) 755
BmiI GGNNCC 1 cut(s) 865
BmrFI CCNGG 2 cut(s) 656, 717
BmsI GCATC 2 cut(s) 229, 985
BoxI GACNNNNGTC 1 cut(s) 463
BplI GAGNNNNNCTC 2 cut(s) 984, 1016
BpmI CTGGAG 1 cut(s) 915
Bpu10I CCTNAGC 1 cut(s) 977
Bpu1102I GCTNAGC 1 cut(s) 630
BpuMI CCSGG 2 cut(s) 656, 717
BsaHI GRCGYC 1 cut(s) 1008
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 910, 940
Bse1I ACTGG 1 cut(s) 932
Bse21I CCTNAGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 621, 860, 991, 1017
BseNI ACTGG 1 cut(s) 932
BseRI GAGGAG 3 cut(s) 657, 918, 1097
BseXI GCAGC 5 cut(s) 397, 496, 538, 730, 919
Bsh1236I CGCG 1 cut(s) 676
BshFI GGCC 2 cut(s) 5, 480
BsiHKCI CYCGRG 2 cut(s) 173, 327
BsiSI CCGG 3 cut(s) 266, 655, 716
BslFI GGGAC 1 cut(s) 502
BsmAI GTCTC 2 cut(s) 110, 849
BsmFI GGGAC 1 cut(s) 502
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 2 cut(s) 5, 480
BsoBI CYCGRG 2 cut(s) 173, 327
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 2 cut(s) 233, 674
BspANI GGCC 2 cut(s) 5, 480
BspCNI CTCAG 4 cut(s) 622, 859, 990, 1016
BspFNI CGCG 1 cut(s) 676
BspHI TCATGA 2 cut(s) 79, 1048
BspLI GGNNCC 1 cut(s) 865
BspMAI CTGCAG 2 cut(s) 696, 909
BspPI GGATC 3 cut(s) 276, 368, 1133
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 1 cut(s) 932
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
BssNI GRCGYC 1 cut(s) 1008
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 201, 405, 597, 728
Bst6I CTCTTC 2 cut(s) 894, 1149
BstACI GRCGYC 1 cut(s) 1008
BstAUI TGTACA 1 cut(s) 936
BstC8I GCNNGC 3 cut(s) 318, 561, 710
BstDEI CTNAG 5 cut(s) 487, 630, 846, 977, 1003
BstDSI CCRYGG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 676
BstKTI GATC 8 cut(s) 271, 376, 421, 548, 790, 855, 1048, 1141
BstMAI GTCTC 2 cut(s) 110, 849
BstMBI GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 132, 560, 569
BstNSI RCATGY 1 cut(s) 712
BstPAI GACNNNNGTC 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 654, 715
BstSFI CTRYAG 2 cut(s) 692, 905
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 5 cut(s) 397, 496, 538, 730, 919
BstX2I RGATCY 1 cut(s) 787
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 787
Bsu36I CCTNAGG 1 cut(s) 487
BsuRI GGCC 2 cut(s) 5, 480
BtgI CCRYGG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 3 cut(s) 593, 816, 939
Cac8I GCNNGC 3 cut(s) 318, 561, 710
CciI TCATGA 2 cut(s) 79, 1048
Cfr13I GGNCC 1 cut(s) 755
Csp6I GTAC 2 cut(s) 10, 937
CviAII CATG 6 cut(s) 80, 249, 396, 709, 943, 1049
CviQI GTAC 2 cut(s) 10, 937
DdeI CTNAG 5 cut(s) 487, 630, 846, 977, 1003
DpnI GATC 8 cut(s) 270, 375, 420, 547, 789, 854, 1047, 1140
DpnII GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
EaeI YGGCCR 2 cut(s) 3, 478
Eam1104I CTCTTC 2 cut(s) 894, 1149
EarI CTCTTC 2 cut(s) 894, 1149
Eco32I GATATC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 755
Eco57I CTGAAG 1 cut(s) 1141
Eco81I CCTNAGG 1 cut(s) 487
Eco88I CYCGRG 2 cut(s) 173, 327
EcoRI GAATTC 1 cut(s) 186
EcoRV GATATC 1 cut(s) 588
FaeI CATG 6 cut(s) 83, 252, 399, 712, 946, 1052
FaqI GGGAC 1 cut(s) 502
FatI CATG 6 cut(s) 79, 248, 395, 708, 942, 1048
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 2 cut(s) 852, 1045
Fnu4HI GCNGC 6 cut(s) 233, 411, 510, 552, 744, 908
Fsp4HI GCNGC 6 cut(s) 233, 411, 510, 552, 744, 908
FspBI CTAG 4 cut(s) 21, 44, 342, 506
GluI GCNGC 6 cut(s) 233, 411, 510, 552, 744, 908
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 2 cut(s) 5, 480
HapII CCGG 3 cut(s) 266, 655, 716
Hin1I GRCGYC 1 cut(s) 1008
Hin1II CATG 6 cut(s) 83, 252, 399, 712, 946, 1052
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 1 cut(s) 338
HpaII CCGG 3 cut(s) 266, 655, 716
HphI GGTGA 1 cut(s) 1124
Hpy166II GTNNAC 6 cut(s) 350, 445, 724, 924, 937, 1012
Hpy188I TCNGA 8 cut(s) 228, 273, 585, 849, 857, 957, 1006, 1128
Hpy188III TCNNGA 4 cut(s) 57, 80, 327, 1049
Hpy8I GTNNAC 6 cut(s) 350, 445, 724, 924, 937, 1012
HpyAV CCTTC 2 cut(s) 24, 786
HpyCH4III ACNGT 4 cut(s) 201, 405, 597, 728
HpyCH4IV ACGT 4 cut(s) 309, 474, 920, 1008
HpyCH4V TGCA 8 cut(s) 65, 102, 181, 694, 708, 712, 907, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 560, 569
HpyF3I CTNAG 5 cut(s) 487, 630, 846, 977, 1003
HpySE526I ACGT 4 cut(s) 309, 474, 920, 1008
Hsp92I GRCGYC 1 cut(s) 1008
Hsp92II CATG 6 cut(s) 83, 252, 399, 712, 946, 1052
Ksp22I TGATCA 2 cut(s) 852, 1045
Kzo9I GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
Lsp1109I GCAGC 5 cut(s) 397, 496, 538, 730, 919
LweI GCATC 2 cut(s) 229, 985
MaeI CTAG 4 cut(s) 21, 44, 342, 506
MaeII ACGT 4 cut(s) 309, 474, 920, 1008
MaeIII GTNAC 3 cut(s) 164, 465, 748
MalI GATC 8 cut(s) 270, 375, 420, 547, 789, 854, 1047, 1140
MboI GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
MboII GAAGA 5 cut(s) 170, 413, 881, 1136, 1147
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 787
MlsI TGGCCA 2 cut(s) 5, 480
MluNI TGGCCA 2 cut(s) 5, 480
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 756
Mox20I TGGCCA 2 cut(s) 5, 480
MscI TGGCCA 2 cut(s) 5, 480
MseI TTAA 4 cut(s) 149, 530, 542, 1032
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 2 cut(s) 5, 480
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 3 cut(s) 266, 655, 716
MspR9I CCNGG 2 cut(s) 656, 717
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 1123
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 3 cut(s) 132, 560, 569
NciI CCSGG 2 cut(s) 656, 717
NdeI CATATG 1 cut(s) 193
NdeII GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
NlaIII CATG 6 cut(s) 83, 252, 399, 712, 946, 1052
NlaIV GGNNCC 1 cut(s) 865
NmuCI GTSAC 1 cut(s) 465
NspI RCATGY 1 cut(s) 712
PaeI GCATGC 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 327
PagI TCATGA 2 cut(s) 79, 1048
PctI GAATGC 1 cut(s) 1123
PfoI TCCNGGA 1 cut(s) 654
PkrI GCNGC 6 cut(s) 234, 412, 511, 553, 745, 909
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PshAI GACNNNNGTC 1 cut(s) 463
PsiI TTATAA 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 865
PspPI GGNCC 1 cut(s) 755
PstI CTGCAG 2 cut(s) 696, 909
PsuI RGATCY 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 11, 938
RsaNI GTAC 2 cut(s) 10, 937
RseI CAYNNNNRTG 1 cut(s) 872
SaqAI TTAA 4 cut(s) 149, 530, 542, 1032
SatI GCNGC 6 cut(s) 233, 411, 510, 552, 744, 908
Sau3AI GATC 8 cut(s) 268, 373, 418, 545, 787, 852, 1045, 1138
Sau96I GGNCC 1 cut(s) 755
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 656, 717
SfaNI GCATC 2 cut(s) 229, 985
SfcI CTRYAG 2 cut(s) 692, 905
Sfr274I CTCGAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 755
SlaI CTCGAG 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SphI GCATGC 1 cut(s) 712
SsiI CCGC 2 cut(s) 233, 674
SspMI CTAG 4 cut(s) 21, 44, 342, 506
StyD4I CCNGG 2 cut(s) 654, 715
TaaI ACNGT 4 cut(s) 201, 405, 597, 728
TaiI ACGT 4 cut(s) 312, 477, 923, 1011
TaqI TCGA 3 cut(s) 328, 879, 1068
TatI WGTACW 1 cut(s) 936
TauI GCSGC 1 cut(s) 235
Tru1I TTAA 4 cut(s) 149, 530, 542, 1032
Tru9I TTAA 4 cut(s) 149, 530, 542, 1032
TscAI CASTG 3 cut(s) 600, 823, 939
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 5 cut(s) 410, 509, 551, 743, 907
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 3 cut(s) 274, 823, 1093
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 3 cut(s) 600, 823, 939
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 4 cut(s) 186, 211, 659, 829
XceI RCATGY 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 327
XspI CTAG 4 cut(s) 21, 44, 342, 506
ZraI GACGTC 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.