Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Reverse (-)

59315863 .. 59316582

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0461400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAGGAACCCCCGCGTCTCGAGCTCCCGCCGCAAGAGCCGCAAGGCTCACTTCACGGCGCCGTCGTCGGTCCGCCGCGTCCTGATGAGCGCGCCTCTCTCCTCCGACCTCCGGTCCAAGTACACCGTCCGGTCCATGCCGGTGCGCAAAGACGACGAGGTCCAGGTGGTGCGCGGGACCTACAAGGGCCGCGAGGGCAAGGTGGTCCAGGTGTACCGCCGCAAGTGGGTGATCCACATCGAGCGCATCACCAGGGAGAAGGTGAACGGGTCGACGGTCAACGTCGGCATCAACCCCTCGAAGGTGGTCATCACCAAGCTCAGGCTCGACAAGGACCGCAAGTCTCTGCTCGACCGCAAGGCCAAGGGCCGCGCCGCCGCTGACAAGGACAAGGGCACCAAGTTCACCGCCGAGGATATCATGCAGAACGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

146

Amino Acids

16.71

Weight (kDa)

11.14

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	5e-37	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.6e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	61, 398
AccI	GTMKAC	2 cut(s)	275, 435
AccII	CGCG	6 cut(s)	18, 81, 95, 177, 195, 375
AclWI	GGATC	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	125, 218
AfiI	CCNNNNNNNGG	4 cut(s)	114, 229, 304, 324
AhdI	GACNNNNNGTC	2 cut(s)	115, 343
AjnI	CCWGG	3 cut(s)	165, 210, 254
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	25, 351
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	190, 363, 370
AspLEI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 377
AspS9I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 337, 370
AsuHPI	GGTGA	5 cut(s)	244, 244, 277, 307, 400
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 337
BaeGI	GKGCMC	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	61, 398
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	49, 75
BciT130I	CCWGG	3 cut(s)	167, 212, 256
BcoDI	GTCTC	2 cut(s)	25, 351
BfoI	RGCGCY	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 373, 378, 381
BlsI	GCNGC	8 cut(s)	35, 44, 80, 194, 224, 374, 379, 382
Bme1390I	CCNGG	3 cut(s)	167, 212, 256
Bme18I	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 337
BmeRI	GACNNNNNGTC	2 cut(s)	115, 343
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 337, 370
BmiI	GGNNCC	4 cut(s)	11, 63, 181, 400
BmrFI	CCNGG	3 cut(s)	167, 212, 256
BmsI	GCATC	2 cut(s)	258, 300
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	255, 366, 414
BsaWI	WCCGGW	2 cut(s)	114, 132
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 229, 304, 324
Bse118I	RCCGGY	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	167, 212, 256
BseDI	CCNNGG	3 cut(s)	255, 366, 414
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	4 cut(s)	114, 229, 304, 324
BseMII	CTCAG	1 cut(s)	337
BsePI	GCGCGC	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	401
Bsh1236I	CGCG	6 cut(s)	18, 81, 95, 177, 195, 375
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	192, 365, 372
BshNI	GGYRCC	2 cut(s)	61, 398
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	115, 133, 143
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	114, 229, 304, 324
BsmAI	GTCTC	2 cut(s)	25, 351
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	192, 365, 372
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	29, 401
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	3 cut(s)	192, 365, 372
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 375
BspLI	GGNNCC	4 cut(s)	11, 63, 181, 400
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	2 cut(s)	61, 398
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	255, 366, 414
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	167, 212, 256
Bst4CI	ACNGT	2 cut(s)	130, 280
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	323
BstFNI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 375
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 377
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	25, 351
BstMBI	GATC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
BstNI	CCWGG	3 cut(s)	167, 212, 256
BstSCI	CCNGG	3 cut(s)	165, 210, 254
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 375
BsuRI	GGCC	3 cut(s)	192, 365, 372
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 377
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 337, 370
CpoI	CGGWCCG	1 cut(s)	73
CseI	GACGC	2 cut(s)	7, 70
Csp6I	GTAC	2 cut(s)	124, 217
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	2 cut(s)	139, 424
CviJI	RGCY	8 cut(s)	27, 42, 50, 192, 322, 328, 365, 372
CviKI_1	RGCY	8 cut(s)	27, 42, 50, 192, 322, 328, 365, 372
CviQI	GTAC	2 cut(s)	124, 217
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	2 cut(s)	115, 343
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 343
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 337
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	3 cut(s)	165, 210, 254
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	142, 427
FaiI	YATR	2 cut(s)	140, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	138, 423
FauI	CCCGC	3 cut(s)	23, 38, 170
FblI	GTMKAC	2 cut(s)	275, 435
Fnu4HI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 373, 378, 381
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 373, 378, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	7 cut(s)	63, 94, 96, 149, 176, 248, 376
GluI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 373, 378, 381
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	192, 365, 372
HapII	CCGG	3 cut(s)	115, 133, 143
HgaI	GACGC	2 cut(s)	7, 70
HhaI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 377
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	142, 427
Hin6I	GCGC	7 cut(s)	62, 93, 95, 148, 175, 247, 375
HinP1I	GCGC	7 cut(s)	62, 93, 95, 148, 175, 247, 375
HincII	GTYRAC	3 cut(s)	276, 283, 436
HindII	GTYRAC	3 cut(s)	276, 283, 436
HpaII	CCGG	3 cut(s)	115, 133, 143
HphI	GGTGA	5 cut(s)	244, 244, 277, 307, 400
Hpy166II	GTNNAC	7 cut(s)	126, 217, 268, 276, 283, 408, 436
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	22, 85
Hpy8I	GTNNAC	7 cut(s)	126, 217, 268, 276, 283, 408, 436
Hpy99I	CGWCG	6 cut(s)	70, 73, 161, 280, 290, 437
HpyAV	CCTTC	2 cut(s)	256, 298
HpyCH4III	ACNGT	2 cut(s)	130, 280
HpyCH4IV	ACGT	2 cut(s)	285, 432
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	285, 432
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	142, 427
HspAI	GCGC	7 cut(s)	62, 93, 95, 148, 175, 247, 375
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	32
LweI	GCATC	2 cut(s)	258, 300
MaeII	ACGT	2 cut(s)	285, 432
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	29, 401
Mly113I	GGCGCC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	7 cut(s)	108, 115, 122, 154, 190, 310, 409
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	115, 133, 143
MspR9I	CCNGG	3 cut(s)	167, 212, 256
MvaI	CCWGG	3 cut(s)	167, 212, 256
MvnI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 375
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	142, 427
NlaIV	GGNNCC	4 cut(s)	11, 63, 181, 400
NmeAIII	GCCGAG	1 cut(s)	439
NsbI	TGCGCA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	8 cut(s)	35, 44, 80, 194, 224, 374, 379, 382
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	165, 210, 254
PspGI	CCWGG	3 cut(s)	165, 210, 254
PspN4I	GGNNCC	4 cut(s)	11, 63, 181, 400
PspPI	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 337, 370
PspPPI	RGGWCCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	2 cut(s)	125, 218
RsaNI	GTAC	2 cut(s)	124, 217
RseI	CAYNNNNRTG	1 cut(s)	143
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	29
SalI	GTCGAC	2 cut(s)	274, 434
SatI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 373, 378, 381
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 337, 370
ScrFI	CCNGG	3 cut(s)	167, 212, 256
SduI	GDGCHC	2 cut(s)	29, 401
SfaNI	GCATC	2 cut(s)	258, 300
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 337
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	165, 210, 254
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	130, 280
TaiI	ACGT	2 cut(s)	288, 435
TaqI	TCGA	7 cut(s)	23, 243, 275, 302, 330, 354, 435
TaqII	GACCGA	1 cut(s)	61
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	8 cut(s)	36, 45, 81, 195, 225, 375, 380, 383
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 337
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	2 cut(s)	275, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.