Rh2BG155500
ERF Family

Belongs to the AB hydrolase superfamily. Lipase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
13305341 .. 13305913
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG155500.1

Sequence Viewer

Length: 480 bp
ATGGCCAAGTACCCTTCAGCTAGTATTTTACTTCTTGTGGCTCTAGCTTGTGTTTCAGGAGTTGCACAAACCAATGGTCTTGATATTTATAATGGTATTTGCAAATCTCTAGTGGAGACACGAGGCTATATTTGCCAAGAACATCACGTAACAACCGAAGATGGTTACATTCTTGGGTTGCTAAGAATTCCATATGGACGGTCTGGTAGCAAATCGATCACGGATCAGAAGCCGCCTGTTTTGTTGCAACATGGGCTTCGAACGGATGCGGCATCATGGCTACTCAATCCACCGGATCAAACTTTGACGTTCATCTTGGCTGGCAAAGGGTTTGATTTATGGCTTGCTAATGCTCGAGGAACGGACTCTAGCCGTGGACACAAATCACGTGGTACTAATGATCCTGCTTGTTGGGACTGGACATGGGAACAGTTGGCTGCTTATGATCCTACTGCTTTGTTCAATTATGTGAACAAATAA

Protein Analysis

159

Amino Acids

17.45

Weight (kDa)

6.88

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 2.9e-19 Partial alpha/beta-hydrolase lipase region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AciI CCGC 2 cut(s) 233, 269
AclWI GGATC 4 cut(s) 231, 303, 395, 440
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 186
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 11, 394
AgsI TTSAA 1 cut(s) 463
AluBI AGCT 2 cut(s) 20, 47
AluI AGCT 2 cut(s) 20, 47
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 4 cut(s) 231, 303, 395, 440
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AsuII TTCGAA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 354
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 389
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 4 cut(s) 21, 44, 110, 369
BisI GCNGC 3 cut(s) 233, 270, 438
BlsI GCNGC 3 cut(s) 234, 271, 439
BmeT110I CYCGRG 1 cut(s) 354
BmsI GCATC 2 cut(s) 256, 281
Bpu14I TTCGAA 1 cut(s) 259
Bsa29I ATCGAT 1 cut(s) 215
BsaAI YACGTR 2 cut(s) 148, 389
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 424
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 5 cut(s) 216, 223, 295, 400, 445
BspACI CCGC 2 cut(s) 233, 269
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 215
BspPI GGATC 4 cut(s) 231, 303, 395, 440
BspT104I TTCGAA 1 cut(s) 259
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 5 cut(s) 216, 223, 295, 400, 445
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 201, 432
BstBAI YACGTR 2 cut(s) 148, 389
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 322, 345
BstDEI CTNAG 1 cut(s) 182
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 5 cut(s) 219, 226, 298, 403, 448
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 5 cut(s) 216, 223, 295, 400, 445
BstMWI GCNNNNNNNGC 2 cut(s) 132, 253
BstV1I GCAGC 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 215
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 322, 345
ClaI ATCGAT 1 cut(s) 215
Csp6I GTAC 2 cut(s) 10, 393
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 3 cut(s) 251, 276, 423
CviQI GTAC 2 cut(s) 10, 393
DdeI CTNAG 1 cut(s) 182
DpnI GATC 5 cut(s) 218, 225, 297, 402, 447
DpnII GATC 5 cut(s) 216, 223, 295, 400, 445
EaeI YGGCCR 1 cut(s) 3
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 186
FaeI CATG 3 cut(s) 254, 279, 426
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 250, 275, 422
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 233, 270, 438
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 233, 270, 438
FspBI CTAG 4 cut(s) 21, 44, 110, 369
GluI GCNGC 3 cut(s) 233, 270, 438
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 293
Hin1II CATG 3 cut(s) 254, 279, 426
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 377, 472
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 57, 80
Hpy8I GTNNAC 2 cut(s) 377, 472
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 2 cut(s) 201, 432
HpyCH4IV ACGT 3 cut(s) 147, 308, 388
HpyCH4V TGCA 3 cut(s) 65, 102, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 253
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 3 cut(s) 147, 308, 388
Hsp92II CATG 3 cut(s) 254, 279, 426
Kzo9I GATC 5 cut(s) 216, 223, 295, 400, 445
LpnPI CCDG 7 cut(s) 42, 189, 249, 306, 306, 403, 417
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 256, 281
MaeI CTAG 4 cut(s) 21, 44, 110, 369
MaeII ACGT 3 cut(s) 147, 308, 388
MaeIII GTNAC 2 cut(s) 148, 164
MalI GATC 5 cut(s) 218, 225, 297, 402, 447
MboI GATC 5 cut(s) 216, 223, 295, 400, 445
MboII GAAGA 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 186, 463
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 2 cut(s) 116, 350
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 132, 253
NdeI CATATG 1 cut(s) 193
NdeII GATC 5 cut(s) 216, 223, 295, 400, 445
NlaIII CATG 3 cut(s) 254, 279, 426
NspV TTCGAA 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PkrI GCNGC 3 cut(s) 234, 271, 439
PleI GAGTC 1 cut(s) 359
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 2 cut(s) 148, 389
PsiI TTATAA 1 cut(s) 90
PspCI CACGTG 1 cut(s) 389
PspXI VCTCGAGB 1 cut(s) 354
RsaI GTAC 2 cut(s) 11, 394
RsaNI GTAC 2 cut(s) 10, 393
SatI GCNGC 3 cut(s) 233, 270, 438
Sau3AI GATC 5 cut(s) 216, 223, 295, 400, 445
SchI GAGTC 1 cut(s) 359
SetI ASST 5 cut(s) 22, 49, 150, 311, 391
SfaNI GCATC 2 cut(s) 256, 281
Sfr274I CTCGAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 2 cut(s) 186, 463
SsiI CCGC 2 cut(s) 233, 269
SspMI CTAG 4 cut(s) 21, 44, 110, 369
TaaI ACNGT 2 cut(s) 201, 432
TaiI ACGT 3 cut(s) 150, 311, 391
TaqI TCGA 3 cut(s) 215, 259, 355
TasI AATT 2 cut(s) 186, 463
TauI GCSGC 2 cut(s) 235, 272
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 3 cut(s) 236, 278, 377
XapI RAATTY 1 cut(s) 186
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 4 cut(s) 21, 44, 110, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.