FvH4_6g08194
MYB Family

nuclease HARBI1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
4889578 .. 4890348
771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08194.t1

Sequence Viewer

Length: 537 bp
ATGCAAGTTCACAAAGACGCCAAAGGACTTAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGAAAAGATCGAGCCAATGGGTTGGGGGCTGAAAGACATGCTGAAGTGGATGAAAATTTGAATAACAATAACGAATTTGTTGATCTCGAAGGAGATGGTTTGTGTGAAAATGTTGTTCCTACATCTGCTACTCGCACTCCTTCTGCTCTTAGTTCAACTCGGACTAGAAAGAGACCCAGAGATGCTTATACTCAATGCTTGAGAGACATGGCTACCACACTATGCTCCTTTATGGACGTGACCAAGACCCACTTGGAGACTATAAAAGAAGTGTTTTTGAATGAACATGCAACATCTACAAAAAGTGGCAAACTTGTTGAAGAGCTTATGAAAGTTGAAGGTATGAATGATTTGGATGTACTTACTGCAACAATTATTGGTGATGACTCTAAAATTGAGCTCTTGTTCAGCTTGCCTGACAATTTAAAGAGGCAATGGATTCATAAGCTTCTTAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

20.05

Weight (kDa)

5.8

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 130, 149
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 435
AgsI TTSAA 5 cut(s) 136, 231, 355, 395, 413
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 5 cut(s) 71, 400, 475, 486, 523
AluI AGCT 5 cut(s) 71, 400, 475, 486, 523
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 3 cut(s) 241, 273, 326
ApoI RAATTY 2 cut(s) 130, 149
AsuHPI GGTGA 1 cut(s) 467
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 3 cut(s) 241, 273, 326
BfaI CTAG 2 cut(s) 240, 535
BmgBI CACGTC 1 cut(s) 313
BmsI GCATC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 295
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse3DI GCAATG 1 cut(s) 515
BseGI GGATG 2 cut(s) 130, 436
BseMI GCAATG 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 477
BsmAI GTCTC 3 cut(s) 241, 273, 326
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 2 cut(s) 82, 157
BspQI GCTCTTC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 515
BssMI GATC 2 cut(s) 82, 157
BssNI GRCGYC 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 29, 224
BstF5I GGATG 2 cut(s) 130, 436
BstKTI GATC 2 cut(s) 85, 160
BstMAI GTCTC 3 cut(s) 241, 273, 326
BstMBI GATC 2 cut(s) 82, 157
BstNSI RCATGY 2 cut(s) 116, 365
BstXI CCANNNNNNTGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 130, 436
Cac8I GCNNGC 1 cut(s) 488
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 113, 283, 362
CviJI RGCY 8 cut(s) 71, 89, 104, 287, 400, 475, 486, 523
CviKI_1 RGCY 8 cut(s) 71, 89, 104, 287, 400, 475, 486, 523
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 2 cut(s) 29, 224
DpnI GATC 2 cut(s) 84, 159
DpnII GATC 2 cut(s) 82, 157
DraI TTTAAA 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 3 cut(s) 116, 286, 365
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 3 cut(s) 112, 282, 361
FokI GGATG 2 cut(s) 137, 443
FriOI GRGCYC 1 cut(s) 477
FspBI CTAG 2 cut(s) 240, 535
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 3 cut(s) 116, 286, 365
HindIII AAGCTT 2 cut(s) 69, 521
HinfI GANTC 2 cut(s) 461, 514
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 158, 225, 407
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 4, 365, 443
HpyF3I CTNAG 2 cut(s) 29, 224
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 3 cut(s) 116, 286, 365
Kzo9I GATC 2 cut(s) 82, 157
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 2 cut(s) 265, 504
LweI GCATC 1 cut(s) 247
MaeI CTAG 2 cut(s) 240, 535
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 84, 159
MboI GATC 2 cut(s) 82, 157
MboII GAAGA 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 5 cut(s) 130, 149, 447, 468, 496
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 1 cut(s) 498
MseI TTAA 3 cut(s) 36, 500, 528
NdeII GATC 2 cut(s) 82, 157
NlaIII CATG 3 cut(s) 116, 286, 365
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 2 cut(s) 116, 365
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 514
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 477
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SacI GAGCTC 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 36, 500, 528
Sau3AI GATC 2 cut(s) 82, 157
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 1 cut(s) 477
SetI ASST 7 cut(s) 73, 315, 402, 418, 477, 488, 525
SfaNI GCATC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 5 cut(s) 130, 149, 447, 468, 496
SspMI CTAG 2 cut(s) 240, 535
SstI GAGCTC 1 cut(s) 477
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 85, 162
TasI AATT 5 cut(s) 130, 149, 447, 468, 496
TatI WGTACW 1 cut(s) 433
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 36, 500, 528
Tru9I TTAA 3 cut(s) 36, 500, 528
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 7 cut(s) 34, 38, 141, 372, 419, 434, 506
XapI RAATTY 2 cut(s) 130, 149
XceI RCATGY 2 cut(s) 116, 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 2 cut(s) 240, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.