Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

47885404 .. 47890608

Gene Structure 5205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGTTCAGCAAATTCTACTCGTAAAAGAAAACAACCAGAACAGCCATCACACAACTGGACCCCTCGTGAAGATGTGGCTCTAGTTGAGGTGCTAACAGAGATATGTGTTGGTGGCTATTGGAAGGTTGACAGTGGCTTCAGGTCTGGGTACTTGGGTAAACTTGAACAGATTATAGAGCAAAAGCTACCAAACTGTGGGCTTAAGGCAAACCCCCACATTGAGTCTCGTTTGAAGACATTGAAGAAACAAACACTTGCCATCTACGACATGCTTTCGAACTCAAGTGGGTTCTCATGGAACCATGAAGAAAAAATGGTGGTGTGTGAAAAACAAGTGTTTGATGATTGGGTTAAAGTTCATAAGGATGCAAAAGGACTGAGAATGAAACCATTCATTCATTATGATAGCTTGATAGAAGCCTTTGGCAGAGACCGTGCAAATGGATTAGGAGCTGAAGGACCAGCCGAAGCAGATGAGGATCTCAATAATGAGAATAACTATGCTGACATTGAAGAAAATGGTTTGGATGAAATCACAGTTCCTTCATCTGTTACCCGTAATTCTGCAAACCCACCTTCAGCTCGAACTAGGAAGCGAGCACGAGATGCTTATTCTCAATGTTTGGGAGACATGGCTAGCACATTACGCTCCTTTGTGGACGTGACCAAGGCACACTTGGAGACAATGCAGGGATTACTCATGAATGAGCATGTAACATCTGAAAGAAGAGGTAAGCTTGTGGAGGAGCTTATGAAAATTGAAGGTATAAATGACTATGATGTAATAGAAGCTGCTGCTGCAATTATTGGTGATGACTCCAAAATTGACCTCTTGTTCAGTTTGCCAGACAACCTCAAAAGTCAATGGATTCATAAACTTCTTGGCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

297

Amino Acids

33.42

Weight (kDa)

5.7

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	19 - 115	3.8e-07	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	886
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	3 cut(s)	124, 477, 564
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	167, 235, 244, 515, 764
AjiI	CACGTC	1 cut(s)	664
AluBI	AGCT	7 cut(s)	187, 411, 455, 584, 739, 751, 794
AluI	AGCT	7 cut(s)	187, 411, 455, 584, 739, 751, 794
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	4 cut(s)	231, 426, 624, 677
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	1 cut(s)	886
ApeKI	GCWGC	3 cut(s)	794, 797, 800
ApoI	RAATTY	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	60, 461
AsuHPI	GGTGA	1 cut(s)	824
AsuII	TTCGAA	1 cut(s)	278
AsuNHI	GCTAGC	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	60, 461
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BauI	CACGAG	2 cut(s)	66, 603
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	781, 784, 787
BccI	CCATC	2 cut(s)	55, 269
BceAI	ACGGC	1 cut(s)	873
BcoDI	GTCTC	4 cut(s)	231, 426, 624, 677
BfaI	CTAG	3 cut(s)	83, 591, 639
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	795, 798, 801
BlsI	GCNGC	3 cut(s)	796, 799, 802
Bme18I	GGWCC	2 cut(s)	60, 461
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	60, 461
BmiI	GGNNCC	2 cut(s)	62, 302
BmsI	GCATC	2 cut(s)	358, 598
BmtI	GCTAGC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	2 cut(s)	373, 535
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	3 cut(s)	781, 784, 787
BshFI	GGCC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	4 cut(s)	231, 426, 624, 677
BsnI	GGCC	1 cut(s)	888
Bso31I	GGTCTC	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	481
BspANI	GGCC	1 cut(s)	888
BspCNI	CTCAG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	62, 302
BspOI	GCTAGC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	1 cut(s)	481
BssSI	CACGAG	2 cut(s)	66, 603
BssT1I	CCWWGG	1 cut(s)	669
Bst2BI	CACGAG	2 cut(s)	66, 603
Bst4CI	ACNGT	4 cut(s)	134, 197, 437, 541
Bst6I	CTCTTC	1 cut(s)	724
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	600, 640
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	373, 535
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	4 cut(s)	231, 426, 624, 677
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	3 cut(s)	608, 648, 800
BstNSI	RCATGY	2 cut(s)	274, 716
BstV1I	GCAGC	3 cut(s)	781, 784, 787
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	888
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	373, 535
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	600, 640
CciI	TCATGA	1 cut(s)	702
Cfr13I	GGNCC	2 cut(s)	60, 461
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	6 cut(s)	271, 297, 305, 634, 703, 713
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	886
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Eco130I	CCWWGG	1 cut(s)	669
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	60, 461
Eco57I	CTGAAG	3 cut(s)	124, 477, 564
EcoT14I	CCWWGG	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	669
FaeI	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	6 cut(s)	270, 296, 304, 633, 702, 712
Fnu4HI	GCNGC	3 cut(s)	795, 798, 801
FokI	GGATG	2 cut(s)	380, 542
Fsp4HI	GCNGC	3 cut(s)	795, 798, 801
FspBI	CTAG	3 cut(s)	83, 591, 639
GluI	GCNGC	3 cut(s)	795, 798, 801
HaeIII	GGCC	1 cut(s)	888
Hin1II	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	3 cut(s)	224, 818, 871
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	3 cut(s)	130, 161, 661
Hpy188I	TCNGA	1 cut(s)	724
Hpy188III	TCNNGA	2 cut(s)	68, 703
Hpy8I	GTNNAC	3 cut(s)	130, 161, 661
HpyAV	CCTTC	5 cut(s)	118, 452, 555, 588, 758
HpyCH4III	ACNGT	4 cut(s)	134, 197, 437, 541
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	5 cut(s)	371, 440, 569, 691, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	608, 648, 800
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	3 cut(s)	452, 656, 748
LpnPI	CCDG	7 cut(s)	43, 51, 127, 132, 477, 677, 861
Lsp1109I	GCAGC	3 cut(s)	781, 784, 787
LweI	GCATC	2 cut(s)	358, 598
MaeI	CTAG	3 cut(s)	83, 591, 639
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	3 cut(s)	553, 664, 715
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	6 cut(s)	83, 247, 256, 320, 527, 741
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	5 cut(s)	13, 562, 759, 804, 825
MlyI	GAGTC	2 cut(s)	233, 812
MnlI	CCTC	7 cut(s)	75, 82, 472, 725, 739, 842, 866
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	204, 354
MslI	CAYNNNNRTG	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	608, 648, 800
NdeII	GATC	1 cut(s)	481
NheI	GCTAGC	1 cut(s)	638
NlaIII	CATG	6 cut(s)	274, 300, 308, 637, 706, 716
NlaIV	GGNNCC	2 cut(s)	62, 302
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	2 cut(s)	274, 716
NspV	TTCGAA	1 cut(s)	278
PagI	TCATGA	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	871
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	796, 799, 802
PleI	GAGTC	2 cut(s)	232, 812
PpsI	GAGTC	2 cut(s)	232, 812
PspN4I	GGNNCC	2 cut(s)	62, 302
PspPI	GGNCC	2 cut(s)	60, 461
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	204, 354
SatI	GCNGC	3 cut(s)	795, 798, 801
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	2 cut(s)	60, 461
SchI	GAGTC	2 cut(s)	233, 812
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	358, 598
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	2 cut(s)	60, 461
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	203, 283
SmoI	CTYRAG	2 cut(s)	203, 283
Sse9I	AATT	5 cut(s)	13, 562, 759, 804, 825
SspMI	CTAG	3 cut(s)	83, 591, 639
StyI	CCWWGG	1 cut(s)	669
TaaI	ACNGT	4 cut(s)	134, 197, 437, 541
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	2 cut(s)	278, 586
TasI	AATT	5 cut(s)	13, 562, 759, 804, 825
TfiI	GAWTC	1 cut(s)	871
Tru1I	TTAA	2 cut(s)	204, 354
Tru9I	TTAA	2 cut(s)	204, 354
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	794, 797, 800
Tsp45I	GTSAC	1 cut(s)	664
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	60, 461
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	274, 716
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 676
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	3 cut(s)	83, 591, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.