Rmu_sc0003882.1_g000036
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003882.1
OG0001154
Physical Location & Seq
Reverse (-)
122087 .. 125301
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003882.1_g000036.1.cds

Sequence Viewer

Length: 1791 bp
atgttacgcacatctggtaaattaagagacgcaagaaatgtgtctgtagatgaaatggtagctatgttcctgcatattcttgcgcaccatgaaaagaacagaatcatacaagatagatttttgcgttatggggaaacaattagcagatattttaatgcggtattaagagcagtcctatgtctacaaggacaattgttaaaaacaccagaacctgttccagagaactcatctgatgagaagtggaaatggtttaagaattatctcggggcactagatgggacatatattagagtacatgtgccagaagcggacaagtctaggtatcgaagtaggaagaatgaaattgctacaaacgtcttgggagtatgctcccaagatatgcaattcatttatgtattatcgggttgggagggttcggcagcagattcacgagtactacgtgatgccattagtaggagacatgggttccgagtcccccatggatattactaccttgttgatgctgggtatccaaatggggaggggtttcttgctccatatagaggccaaagatatcatttaaatgattggagacaaggataccaacctaccacccctgaagaattttttaacatgaagcattcttctgctaggaatgtgatagagagatgttttgggttacttaagatgcgttgggcaattctaaggagcccttcattttttccagtgaagacacagtgccgaattgttatagcatgttgcttgcttcacaaccttataagaagggaaatggcaattgatcccttagaaaatcaactgaatgccattatggataaccaagatgatgatgatgatataatcaattttatcgactcatcaaaacaatggaatgattggagaagagagttggatttgcaagcaaactcaagatcctcaactagtagaagtggaagaaataaagagaagcaaccatcacacacttggacccctattgaagatgtagctctagttgaggctttaactgaactttgtgtttctaggacttggaaggttgacaatggattcaaggcaggatatttgggacaactagaaaaaattatagagcaaaagctaccaaattgtggattaaaggcgaacgcccacattgagtctcgtgttaagacactaaagaaacaaacactagccatctctgacatgattgctaactcaagtggcttctcatgggaccatgaaaataaaatggttgtttgtgaaaaacaagtgtatgacgattgggttaaggaagccaaaggactaagacttaaaccattcattcattatgatagtttggtggaagcttttgggagagatagagccaatgggttaggagctgaaggacctgctgaagcggatgaagatttgaataatgataatgaatttgttgatctcaaaggagatggtttgcctgaaaatgttgttcctacacctgctactcgtacaacttcttccacttctaattcaactcggactagaaagcgagcaagggacacttatgcccaatgcttgggagacatggctagcacagttcgctcctttgtggatgtgaccaagacacacttggagactatgaaagaagtacttttgaatgaccatgcaacatctacaaaaagaggtaaacttgtcaaagagcttatgaaaattgaaggtttgaatgattatgatgtgcttgaggctgctgctactattattggcgatgactccaaaattgagctcttgttcagcttacctgacaatttaaagagccaatggatttacaagcttcttaaccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

596

Amino Acids

68.16

Weight (kDa)

7.6

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AarI CACCTGC 1 cut(s) 1453
Acc16I TGCGCA 1 cut(s) 84
Acc36I ACCTGC 2 cut(s) 1366, 1453
AccB7I CCANNNNNTGG 2 cut(s) 1100, 1522
AccI GTMKAC 1 cut(s) 181
AciI CCGC 3 cut(s) 158, 308, 1367
AclWI GGATC 2 cut(s) 773, 903
AcsI RAATTY 2 cut(s) 602, 1394
AcuI CTGAAG 3 cut(s) 618, 1371, 1383
AfaI GTAC 4 cut(s) 294, 435, 1456, 1596
AfiI CCNNNNNNNGG 4 cut(s) 453, 542, 1100, 1522
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 7 cut(s) 974, 1045, 1381, 1479, 1603, 1661, 1669
AhlI ACTAGT 1 cut(s) 917
AluBI AGCT 9 cut(s) 62, 983, 1090, 1316, 1349, 1648, 1729, 1740, 1777
AluI AGCT 9 cut(s) 62, 983, 1090, 1316, 1349, 1648, 1729, 1740, 1777
Alw21I GWGCWC 1 cut(s) 1731
Alw26I GTCTC 6 cut(s) 21, 451, 565, 1134, 1521, 1574
AlwI GGATC 2 cut(s) 773, 903
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 419, 1691, 1694
ApoI RAATTY 2 cut(s) 602, 1394
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 963, 1204, 1355
AsuNHI GCTAGC 1 cut(s) 1535
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 3 cut(s) 963, 1204, 1355
BaeGI GKGCMC 1 cut(s) 271
BanII GRGCYC 2 cut(s) 692, 1731
BarI GAAGNNNNNNTAC 2 cut(s) 1447, 1479
BauI CACGAG 2 cut(s) 429, 1131
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 1731
BbvI GCAGC 3 cut(s) 431, 1678, 1681
BccI CCATC 4 cut(s) 269, 958, 1172, 1409
BciVI GTATCC 2 cut(s) 519, 572
BcoDI GTCTC 6 cut(s) 21, 451, 565, 1134, 1521, 1574
BcuI ACTAGT 1 cut(s) 917
BfmI CTRYAG 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 2 cut(s) 1366, 1453
BfuI GTATCC 2 cut(s) 519, 572
BisI GCNGC 3 cut(s) 420, 1692, 1695
BlsI GCNGC 3 cut(s) 421, 1693, 1696
BmcAI AGTACT 2 cut(s) 435, 1596
Bme18I GGWCC 3 cut(s) 963, 1204, 1355
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 3 cut(s) 963, 1204, 1355
BmiI GGNNCC 4 cut(s) 467, 689, 965, 1205
BmsI GCATC 3 cut(s) 433, 490, 657
BmtI GCTAGC 1 cut(s) 1539
BpiI GAAGAC 1 cut(s) 716
BpuEI CTTGAG 3 cut(s) 889, 1171, 1706
BsaAI YACGTR 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 4 cut(s) 453, 542, 1100, 1522
Bse1I ACTGG 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 2 cut(s) 1375, 1564
BseLI CCNNNNNNNGG 4 cut(s) 453, 542, 1100, 1522
BseNI ACTGG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 3 cut(s) 431, 1678, 1681
BseYI CCCAGC 1 cut(s) 503
BshFI GGCC 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 1731
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 5 cut(s) 292, 458, 1074, 1217, 1517
BslI CCNNNNNNNGG 4 cut(s) 453, 542, 1100, 1522
BsmAI GTCTC 6 cut(s) 21, 451, 565, 1134, 1521, 1574
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 5 cut(s) 292, 458, 1074, 1217, 1517
BsmI GAATGC 2 cut(s) 619, 805
BsnI GGCC 1 cut(s) 546
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 3 cut(s) 271, 692, 1731
Bsp143I GATC 3 cut(s) 778, 908, 1402
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 3 cut(s) 158, 308, 1367
BspANI GGCC 1 cut(s) 546
BspLI GGNNCC 4 cut(s) 467, 689, 965, 1205
BspMI ACCTGC 2 cut(s) 1366, 1453
BspOI GCTAGC 1 cut(s) 1539
BspPI GGATC 2 cut(s) 773, 903
BspTI CTTAAG 1 cut(s) 662
BsrI ACTGG 1 cut(s) 704
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 3 cut(s) 778, 908, 1402
BssSI CACGAG 2 cut(s) 429, 1131
BssT1I CCWWGG 1 cut(s) 478
Bst2BI CACGAG 2 cut(s) 429, 1131
Bst4CI ACNGT 2 cut(s) 717, 1543
Bst6I CTCTTC 1 cut(s) 874
BstAFI CTTAAG 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 4 cut(s) 743, 897, 1497, 1537
BstDEI CTNAG 3 cut(s) 683, 784, 1274
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 1375, 1564
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 3 cut(s) 781, 911, 1405
BstMAI GTCTC 6 cut(s) 21, 451, 565, 1134, 1521, 1574
BstMBI GATC 3 cut(s) 778, 908, 1402
BstMWI GCNNNNNNNGC 1 cut(s) 1545
BstNSI RCATGY 2 cut(s) 299, 738
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 431, 1678, 1681
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 908
BstYI RGATCY 1 cut(s) 908
BsuI GTATCC 2 cut(s) 519, 572
BsuRI GGCC 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 478
BtgZI GCGATG 1 cut(s) 1725
BtsCI GGATG 2 cut(s) 1375, 1564
BtsIMutI CAGTG 2 cut(s) 711, 722
BveI ACCTGC 2 cut(s) 1366, 1453
Cac8I GCNNGC 4 cut(s) 743, 897, 1497, 1537
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 963, 1204, 1355
CseI GACGC 1 cut(s) 38
Csp6I GTAC 4 cut(s) 293, 434, 1455, 1595
CviQI GTAC 4 cut(s) 293, 434, 1455, 1595
DdeI CTNAG 3 cut(s) 683, 784, 1274
DpnI GATC 3 cut(s) 780, 910, 1404
DpnII GATC 3 cut(s) 778, 908, 1402
DraI TTTAAA 2 cut(s) 561, 1755
Eam1104I CTCTTC 1 cut(s) 874
EarI CTCTTC 1 cut(s) 874
Ecl136II GAGCTC 1 cut(s) 1729
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 2 cut(s) 692, 1731
Eco32I GATATC 1 cut(s) 554
Eco47I GGWCC 3 cut(s) 963, 1204, 1355
Eco53kI GAGCTC 1 cut(s) 1729
Eco57I CTGAAG 3 cut(s) 618, 1371, 1383
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 1729
EcoO109I RGGNCCY 1 cut(s) 1355
EcoRV GATATC 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 692, 1731
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 21
FalI AAGNNNNNCTT 8 cut(s) 676, 708, 1492, 1524, 1559, 1591, 1581, 1613
FaqI GGGAC 5 cut(s) 292, 458, 1074, 1217, 1517
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 420, 1692, 1695
FokI GGATG 2 cut(s) 1382, 1571
FriOI GRGCYC 2 cut(s) 692, 1731
Fsp4HI GCNGC 3 cut(s) 420, 1692, 1695
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 420, 1692, 1695
GsaI CCCAGC 1 cut(s) 507
HaeIII GGCC 1 cut(s) 546
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HindIII AAGCTT 2 cut(s) 1314, 1775
HinfI GANTC 7 cut(s) 102, 425, 471, 851, 1041, 1127, 1715
Hpy166II GTNNAC 3 cut(s) 182, 1033, 1634
Hpy188I TCNGA 4 cut(s) 232, 470, 1171, 1485
Hpy188III TCNNGA 3 cut(s) 218, 429, 906
Hpy8I GTNNAC 3 cut(s) 182, 1033, 1634
HpyAV CCTTC 5 cut(s) 702, 756, 1021, 1346, 1655
HpyCH4III ACNGT 2 cut(s) 717, 1543
HpyCH4IV ACGT 2 cut(s) 354, 439
HpyCH4V TGCA 4 cut(s) 73, 382, 895, 1613
HpyF10VI GCNNNNNNNGC 1 cut(s) 1545
HpyF3I CTNAG 3 cut(s) 683, 784, 1274
HpySE526I ACGT 2 cut(s) 354, 439
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 3 cut(s) 778, 908, 1402
LmnI GCTCC 5 cut(s) 374, 538, 687, 1346, 1553
Lsp1109I GCAGC 3 cut(s) 431, 1678, 1681
LweI GCATC 3 cut(s) 433, 490, 657
MaeII ACGT 2 cut(s) 354, 439
MaeIII GTNAC 3 cut(s) 3, 657, 1561
MalI GATC 3 cut(s) 780, 910, 1404
MboI GATC 3 cut(s) 778, 908, 1402
MboII GAAGA 9 cut(s) 346, 611, 615, 721, 891, 942, 986, 1385, 1455
MfeI CAATTG 2 cut(s) 191, 774
MflI RGATCY 1 cut(s) 908
MhlI GDGCHC 3 cut(s) 271, 692, 1731
MlyI GAGTC 4 cut(s) 480, 845, 1136, 1709
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 7 cut(s) 403, 514, 536, 922, 985, 1622, 1681
MroXI GAANNNNTTC 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 561
MspCI CTTAAG 1 cut(s) 662
MunI CAATTG 2 cut(s) 191, 774
Mva1269I GAATGC 2 cut(s) 619, 805
MwoI GCNNNNNNNGC 1 cut(s) 1545
NcoI CCATGG 1 cut(s) 478
NdeII GATC 3 cut(s) 778, 908, 1402
NheI GCTAGC 1 cut(s) 1535
NlaIV GGNNCC 4 cut(s) 467, 689, 965, 1205
NmuCI GTSAC 1 cut(s) 1561
NsbI TGCGCA 1 cut(s) 84
NspI RCATGY 2 cut(s) 299, 738
PaqCI CACCTGC 1 cut(s) 1453
PciI ACATGT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 436
PctI GAATGC 2 cut(s) 619, 805
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 102, 425, 1041
PflMI CCANNNNNTGG 2 cut(s) 1100, 1522
PkrI GCNGC 3 cut(s) 421, 1693, 1696
PleI GAGTC 4 cut(s) 479, 845, 1135, 1709
PpsI GAGTC 4 cut(s) 479, 845, 1135, 1709
Ppu21I YACGTR 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 1355
PscI ACATGT 1 cut(s) 295
PsiI TTATAA 1 cut(s) 758
Psp124BI GAGCTC 1 cut(s) 1731
Psp5II RGGWCCY 1 cut(s) 1355
PspFI CCCAGC 1 cut(s) 503
PspN4I GGNNCC 4 cut(s) 467, 689, 965, 1205
PspPI GGNCC 3 cut(s) 963, 1204, 1355
PspPPI RGGWCCY 1 cut(s) 1355
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 908
RsaI GTAC 4 cut(s) 294, 435, 1456, 1596
RsaNI GTAC 4 cut(s) 293, 434, 1455, 1595
RseI CAYNNNNRTG 1 cut(s) 561
SacI GAGCTC 1 cut(s) 1731
SatI GCNGC 3 cut(s) 420, 1692, 1695
Sau3AI GATC 3 cut(s) 778, 908, 1402
Sau96I GGNCC 3 cut(s) 963, 1204, 1355
ScaI AGTACT 2 cut(s) 435, 1596
SchI GAGTC 4 cut(s) 480, 845, 1136, 1709
SduI GDGCHC 3 cut(s) 271, 692, 1731
SfaNI GCATC 3 cut(s) 433, 490, 657
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 3 cut(s) 963, 1204, 1355
SmiI ATTTAAAT 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 4 cut(s) 662, 904, 1186, 1685
SmoI CTYRAG 4 cut(s) 662, 904, 1186, 1685
SpeI ACTAGT 1 cut(s) 917
SsiI CCGC 3 cut(s) 158, 308, 1367
SstI GAGCTC 1 cut(s) 1731
StyI CCWWGG 1 cut(s) 478
SwaI ATTTAAAT 1 cut(s) 561
TaaI ACNGT 2 cut(s) 717, 1543
TaiI ACGT 2 cut(s) 357, 442
TaqI TCGA 2 cut(s) 325, 849
TatI WGTACW 3 cut(s) 292, 433, 1594
TfiI GAWTC 3 cut(s) 102, 425, 1041
TscAI CASTG 2 cut(s) 711, 722
TseFI GTSAC 1 cut(s) 1561
TseI GCWGC 3 cut(s) 419, 1691, 1694
Tsp45I GTSAC 1 cut(s) 1561
TspRI CASTG 2 cut(s) 711, 722
Van91I CCANNNNNTGG 2 cut(s) 1100, 1522
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 3 cut(s) 963, 1204, 1355
XapI RAATTY 2 cut(s) 602, 1394
XceI RCATGY 2 cut(s) 299, 738
XcmI CCANNNNNNNNNTGG 2 cut(s) 957, 1573
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 213
ZrmI AGTACT 2 cut(s) 435, 1596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.