Rroxscaffold_2G00083960
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001154
Physical Location & Seq
Reverse (-)
6485537 .. 6490156
4620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083960.1

Sequence Viewer

Length: 507 bp
ATGGCTTCTCATGGGACCATGAAAATAAAATGGTTGTTTGTGAAAAACAAGTTTATGACGATTGGGTTAAGGACTGCGCAAGCCGATGAAGATGTGAATAATGATAATGAATTTATTGATCTTGAAGGACCTGCGAAGCTGAAAATATTGTTCCTACACCTGCTACTCGTACAACTTCCTCTCGCTTCTAATTCAACTCGGACTAGAAAGCGACCAAGGGATGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCGGCATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGTGCTTGCTATAATTATTGGCGATGACTCCAAAATTGAGCTCTTGTTTAGCTTACCCGACAATTTGAAGAGCCAATGGATTTACAAGCTTCGAACCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

6.44

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 168
Acc16I TGCGCA 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 139, 168
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 171, 312
AgsI TTSAA 6 cut(s) 125, 195, 319, 377, 385, 472
AluBI AGCT 5 cut(s) 139, 364, 445, 456, 493
AluI AGCT 5 cut(s) 139, 364, 445, 456, 493
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 237, 290
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 15, 128
AsuII TTCGAA 1 cut(s) 496
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 2 cut(s) 15, 128
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 237, 290
BfaI CTAG 2 cut(s) 204, 252
BfuAI ACCTGC 2 cut(s) 139, 168
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 15, 128
BmgT120I GGNCC 2 cut(s) 15, 128
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 2 cut(s) 211, 341
BmtI GCTAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 226, 280
BsiHKAI GWGCWC 1 cut(s) 447
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 237, 290
BsmFI GGGAC 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 16
BspMI ACCTGC 2 cut(s) 139, 168
BspOI GCTAGC 1 cut(s) 255
BspQI GCTCTTC 2 cut(s) 354, 467
BspT104I TTCGAA 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 354, 467
BstBI TTCGAA 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 81, 253, 411
BstF5I GGATG 2 cut(s) 226, 280
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 237, 290
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 261, 406
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 226, 280
BveI ACCTGC 2 cut(s) 139, 168
Cac8I GCNNGC 3 cut(s) 81, 253, 411
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 15, 128
Csp6I GTAC 2 cut(s) 170, 311
CviAII CATG 4 cut(s) 11, 19, 247, 326
CviJI RGCY 9 cut(s) 5, 83, 139, 251, 364, 445, 456, 477, 493
CviKI_1 RGCY 9 cut(s) 5, 83, 139, 251, 364, 445, 456, 477, 493
CviQI GTAC 2 cut(s) 170, 311
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 354, 467
EarI CTCTTC 2 cut(s) 354, 467
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 15, 128
Eco53kI GAGCTC 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 4 cut(s) 14, 22, 250, 329
FalI AAGNNNNNCTT 6 cut(s) 208, 240, 275, 307, 297, 329
FaqI GGGAC 1 cut(s) 28
FatI CATG 4 cut(s) 10, 18, 246, 325
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 2 cut(s) 233, 287
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 204, 252
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 79
Hin1II CATG 4 cut(s) 14, 22, 250, 329
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 119, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 406
Hsp92II CATG 4 cut(s) 14, 22, 250, 329
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 2 cut(s) 354, 467
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 2 cut(s) 144, 173
LweI GCATC 2 cut(s) 211, 341
MaeI CTAG 2 cut(s) 204, 252
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 101, 371, 484
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 6 cut(s) 110, 190, 372, 417, 438, 466
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 3 cut(s) 189, 338, 397
MseI TTAA 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 261, 406
NdeII GATC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 14, 22, 250, 329
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 277
NsbI TGCGCA 1 cut(s) 78
NspV TTCGAA 1 cut(s) 496
PaqCI CACCTGC 1 cut(s) 168
PciSI GCTCTTC 2 cut(s) 354, 467
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 2 cut(s) 15, 128
PspPPI RGGWCCY 1 cut(s) 128
RsaI GTAC 2 cut(s) 171, 312
RsaNI GTAC 2 cut(s) 170, 311
SacI GAGCTC 1 cut(s) 447
SapI GCTCTTC 2 cut(s) 354, 467
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 15, 128
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 2 cut(s) 211, 341
SfuI TTCGAA 1 cut(s) 496
SinI GGWCC 2 cut(s) 15, 128
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 6 cut(s) 110, 190, 372, 417, 438, 466
SsiI CCGC 1 cut(s) 329
SspI AATATT 1 cut(s) 147
SspMI CTAG 2 cut(s) 204, 252
SstI GAGCTC 1 cut(s) 447
StyI CCWWGG 1 cut(s) 215
TaqI TCGA 2 cut(s) 357, 496
TasI AATT 6 cut(s) 110, 190, 372, 417, 438, 466
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 5 cut(s) 35, 102, 123, 317, 383
VpaK11BI GGWCC 2 cut(s) 15, 128
XapI RAATTY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 2 cut(s) 204, 252
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.