Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

10973072 .. 10974348

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTTCTGAGATGCTCCGATCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCATGTTTGTATCACTTATGCTTTATCATGGTCTGCTCCTTTCTGAATATCTATTGGCACTTGAGGCCAAGTATGGATGCAAGCTCTGTATTGGTCCCTGCACAACAAAAGAAGAGGGGTTCTACTATGATGCATACTATGGCAGTTTGGGCTTAAATGATGAGCACTTAAAGAAAATTGAATCAGAGGTAGAGAAGGCTGTTAAGGCCAAACAGTGCTTTGAGCGCATTGAAGTATCAATCAATCAATGGAACAGGCCCTCGAGATTTTCTCTGATAACAAATTCAAGGCTTCTTCAGCCTACTGGAGGGGAAATAAAGATCATGAAGTCTGCAGCGAGTTTATGGAATATCATATTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

142

Amino Acids

16.05

Weight (kDa)

7.53

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	242, 293, 348
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	126, 267, 317
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	155, 318
AsuHPI	GGTGA	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	155, 318
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	3 cut(s)	2, 128, 181
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	128, 269, 319
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	128, 269, 319
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	19, 381
BspANI	GGCC	3 cut(s)	128, 269, 319
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	19, 381
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	22, 384
BstMBI	GATC	2 cut(s)	19, 381
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 210, 266, 285, 358
BstNSI	RCATGY	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	128, 269, 319
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	155, 318
CviAII	CATG	3 cut(s)	64, 89, 385
CviJI	RGCY	8 cut(s)	128, 145, 213, 260, 269, 319, 352, 361
CviKI_1	RGCY	8 cut(s)	128, 145, 213, 260, 269, 319, 352, 361
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	21, 383
DpnII	GATC	2 cut(s)	19, 381
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	3 cut(s)	67, 92, 388
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	63, 88, 384
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	396
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	128, 269, 319
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	67, 92, 388
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	6 cut(s)	9, 19, 106, 247, 336, 422
Hpy188III	TCNNGA	2 cut(s)	324, 385
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	141, 162, 194, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 210, 266, 285, 358
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	67, 92, 388
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	19, 381
LmnI	GCTCC	2 cut(s)	20, 102
LpnPI	CCDG	3 cut(s)	172, 301, 351
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	3 cut(s)	2, 128, 181
MalI	GATC	2 cut(s)	21, 383
MboI	GATC	2 cut(s)	19, 381
MboII	GAAGA	2 cut(s)	185, 347
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	3 cut(s)	32, 237, 343
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	118, 169, 241, 331, 362
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	215, 230, 264
MwoI	GCNNNNNNNGC	5 cut(s)	125, 210, 266, 285, 358
NdeII	GATC	2 cut(s)	19, 381
NlaIII	CATG	3 cut(s)	67, 92, 388
NlaIV	GGNNCC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	322
PagI	TCATGA	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	155, 318
PstI	CTGCAG	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	215, 230, 264
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	19, 381
Sau96I	GGNCC	2 cut(s)	155, 318
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	147, 252
SfaNI	GCATC	3 cut(s)	2, 128, 181
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	322
SmlI	CTYRAG	2 cut(s)	122, 322
SmoI	CTYRAG	2 cut(s)	122, 322
Sse9I	AATT	3 cut(s)	32, 237, 343
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	32, 237, 343
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	215, 230, 264
Tru9I	TTAA	3 cut(s)	215, 230, 264
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.