Rroxscaffold_3G00226540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001154
Physical Location & Seq
Forward (+)
10120830 .. 10121114
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226540.1

Sequence Viewer

Length: 285 bp
ATGGCTAGCACACTGCACTCCTTTGTGGATGTAACCAAGGCACACTTGGAGACAATACAAGGAGTACTAATGAATGAGAATGCAACATATGAAAGAAGAGGTAAGCTTTTTGATGTGCTTATGAAAATCGAAGGCATAAATGATTATGATGTTATAGAAGATGCTGCTGCTGCAATTATTGGTGACGACTCCAAAATTGACCTTTTGTTCAGTTTGCCGACAACCTCAAAAGTCAATGGATTCATAAACTTCTTGGTCGTTAGAGAGATGGATGCTAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.48

Weight (kDa)

4.61

Isoelectric Point (pI)

22.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 66
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 164, 167, 170
AsuHPI GGTGA 1 cut(s) 194
AsuNHI GCTAGC 1 cut(s) 5
BbvI GCAGC 3 cut(s) 151, 154, 157
BccI CCATC 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 6, 276
BisI GCNGC 3 cut(s) 165, 168, 171
BlsI GCNGC 3 cut(s) 166, 169, 172
BmcAI AGTACT 1 cut(s) 66
BmsI GCATC 2 cut(s) 151, 262
BmtI GCTAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 34, 277
BseXI GCAGC 3 cut(s) 151, 154, 157
BsmAI GTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 34, 277
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 3 cut(s) 151, 154, 157
BtsCI GGATG 2 cut(s) 34, 277
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 65
CviJI RGCY 2 cut(s) 5, 106
CviKI_1 RGCY 2 cut(s) 5, 106
CviQI GTAC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 7 cut(s) 88, 90, 122, 137, 147, 155, 245
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 165, 168, 171
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 165, 168, 171
FspBI CTAG 2 cut(s) 6, 276
GluI GCNGC 3 cut(s) 165, 168, 171
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 188, 240
HphI GGTGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 16, 83, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Lsp1109I GCAGC 3 cut(s) 151, 154, 157
LweI GCATC 2 cut(s) 151, 262
MaeI CTAG 2 cut(s) 6, 276
MaeIII GTNAC 2 cut(s) 31, 182
MboII GAAGA 2 cut(s) 108, 170
MluCI AATT 2 cut(s) 174, 195
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 2 cut(s) 92, 235
MseI TTAA 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeI CATATG 1 cut(s) 88
NheI GCTAGC 1 cut(s) 5
NmuCI GTSAC 1 cut(s) 182
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 3 cut(s) 166, 169, 172
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 3 cut(s) 165, 168, 171
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 182
SetI ASST 4 cut(s) 103, 108, 204, 227
SfaNI GCATC 2 cut(s) 151, 262
SgeI CNNG 5 cut(s) 18, 49, 58, 71, 265
Sse9I AATT 2 cut(s) 174, 195
SspMI CTAG 2 cut(s) 6, 276
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 174, 195
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 3 cut(s) 164, 167, 170
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 86, 105, 137, 232
TspRI CASTG 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 2 cut(s) 6, 276
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.